Projects in Awesome Lists tagged with alphafold

https://github.com/pachterlab/gget

🧬 gget enables efficient querying of genomic reference databases

alphafold alphafold2 archs4 blast databases enrichment-analysis enrichr ensembl gget ncbi reference uniprot

Last synced: 09 Apr 2025

https://github.com/kyegomez/alphafold3

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

ai alphafold artificial-intelligence bio biology biology-ai geneml ml

Last synced: 13 Apr 2025

https://github.com/kyegomez/AlphaFold3

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

ai alphafold artificial-intelligence bio biology biology-ai geneml ml

Last synced: 18 Jan 2025

https://github.com/urinx/alphafold_pytorch

An implementation of the DeepMind's AlphaFold based on PyTorch for research

alphafold casp13 contact-prediction deep-learning protein-structure-prediction pytorch-implementation structure-prediction

Last synced: 06 Apr 2025

https://github.com/Urinx/alphafold_pytorch

An implementation of the DeepMind's AlphaFold based on PyTorch for research

alphafold casp13 contact-prediction deep-learning protein-structure-prediction pytorch-implementation structure-prediction

Last synced: 13 Nov 2024

https://github.com/dptech-corp/Uni-Fold

An open-source platform for developing protein models beyond AlphaFold.

alphafold alphafold-multimer deep-learning protein-structure pytorch

Last synced: 12 Nov 2024

https://github.com/Zuricho/ParallelFold

Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures

alphafold alphafold2 parafold parallelization

Last synced: 12 Nov 2024

https://github.com/kuixu/alphafold

Install alphafold on the local machine, get out of docker.

alphafold

Last synced: 26 Mar 2025

https://github.com/garywei944/fmol

A simplified drug discovery pipeline -- generating SMILE molecular with AlphaSMILES, predicting protein structure with AlphaFold, and checking the druggability with fpocket/Amber.

alphafold drug-discovery fpocket protein

Last synced: 03 Dec 2024

https://github.com/rishit-dagli/invariant-attention

An implementation of Invariant Point Attention from Alphafold 2

alphafold alphafold2 attention attention-mechanism deep-learning machine-learning tensorflow transformer

Last synced: 11 Mar 2025

https://github.com/charmve/alphafold-baseline

This package provides an basic implementation of the contact prediction network used in AlphaFold 1 for beginner, associated model weights and CASP13 dataset as used for CASP13 (2018) and published in Nature

alphafold baseline protein-protein-interaction protein-structure

Last synced: 13 Feb 2025