Projects in Awesome Lists tagged with alphafold2

https://github.com/aqlaboratory/openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Last synced: 08 Oct 2025

https://github.com/scverse/gget

🧬 gget enables efficient querying of genomic reference databases

alphafold alphafold2 archs4 blast cellxgene databases enrichment-analysis enrichr ensembl genomics gget ncbi proteomics reference rna-seq transcriptomics uniprot

Last synced: 28 Jun 2026

https://github.com/pachterlab/gget

🧬 gget enables efficient querying of genomic reference databases

alphafold alphafold2 archs4 blast databases enrichment-analysis enrichr ensembl genomics gget ncbi proteomics reference rna-seq transcriptomics uniprot

Last synced: 27 Feb 2026

https://github.com/hpcaitech/FastFold

Optimizing AlphaFold Training and Inference on GPU Clusters

alphafold2 cuda evoformer gpu habana-gaudi parallelism protein-folding protein-structure pytorch

Last synced: 01 May 2025

https://github.com/hpcaitech/fastfold

Optimizing AlphaFold Training and Inference on GPU Clusters

alphafold2 cuda evoformer gpu habana-gaudi parallelism protein-folding protein-structure pytorch

Last synced: 13 Apr 2025

https://github.com/martinpacesa/BindCraft

User friendly and accurate binder design pipeline

alphafold2 binder design protein pyrosetta

Last synced: 18 Jul 2025

https://github.com/baaihealth/OpenComplex

Trainable PyTorch framework for developing protein, RNA and complex models.

alphafold2 protein-structure pytorch rna-structure

Last synced: 24 Jul 2025

https://github.com/dptech-corp/uni-fold-jax

Trainable AlphaFold implementation in JAX

alphafold2 deep-learning jax

Last synced: 22 Jan 2026

https://github.com/FreshAirTonight/af2complex

Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.

alphafold2 bioinformatics deep-learning protein-complexes protein-protein-docking protein-protein-interaction protein-structure-prediction

Last synced: 01 May 2025

https://github.com/Zuricho/ParallelFold

Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures

alphafold alphafold2 parafold parallelization

Last synced: 01 May 2025

https://github.com/soedinglab/mmseqs2-app

MMseqs2 app to run on your workstation or servers

alphafold2 bioinformatics colabfold docker docker-compose electron foldseek golang mmseqs profile-search sequence-search structure-search vue

Last synced: 06 Apr 2025

https://github.com/instadeepai/framedipt

FrameDiPT: an SE(3) diffusion model for protein structure inpainting

alphafold2 diffusion-models generative-model inpainting loop-design protein-folding protein-structure tcr

Last synced: 03 Nov 2025

https://github.com/aws-samples/aws-rosettafold

Infrastructure template and Jupyter notebooks for running RoseTTAFold on AWS Batch.

alphafold2 aws aws-batch deep-learning hpc protein-folding rosettafold

Last synced: 11 Jul 2025

https://github.com/instadeepai/lightmhc

LightMHC: A Light Model for pMHC Structure Prediction with Graph Neural Networks

alphafold2 graphneuralnetwork pmhc protein-structure

Last synced: 03 Nov 2025

https://github.com/murrellgroup/invariantpointattention.jl

Julia implementation of AlphaFold 2's Invariant Point Attention

alphafold2 deep-learning transformer

Last synced: 30 Jan 2026

https://github.com/rishit-dagli/invariant-attention

An implementation of Invariant Point Attention from Alphafold 2

alphafold alphafold2 attention attention-mechanism deep-learning machine-learning tensorflow transformer

Last synced: 09 May 2025

https://github.com/giatraskon/algorithms-in-structural-bioinformatics-assignments

Assignments from the 'Algorithms in Structural Bioinformatics' graduate course, exploring RNA folding, molecular conformational analysis, and protein structure comparison using Python and bioinformatics tools.

alphafold2 bioinformatics biopython chimerax computational-biology conformational-analysis crude-energy-minimization jupyter-notebook protein-structure-analysis pymol python rmsd rna-folding root-mean-square-deviation sars-cov-2 secondary-structure-elements serotonin structural-bioinformatics structural-biology structure-visualization

Last synced: 22 Apr 2026

https://github.com/joerivandervelde/alphscore-gene-plots

Plot AlphaFold2-based pathogenicity prediction scores for a particular gene and suggest a gene-specific threshold for separating pathogenic from benign variants.

alphafold2 dna-sequencing pathogenicity-classification

Last synced: 06 Jul 2026