Projects in Awesome Lists tagged with bed
A curated list of projects in awesome lists tagged with bed .
https://github.com/tariqdaouda/pygeno
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bed bioinformatics biology cancer cancer-genomes cancer-genomics csv-parser ensembl genome genome-annotation genome-browser genome-sequencing genomes genomics gtf medical medicine proteomics snps vcf
Last synced: 09 Oct 2025
https://github.com/bedops/bedops
:microscope: BEDOPS: high-performance genomic feature operations
bed bedops bioinformatics c c-plus-plus compression conversion genomics parallel pipeline set set-theory toolkit
Last synced: 04 Apr 2025
https://github.com/tariqdaouda/pyGeno
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bed bioinformatics biology cancer cancer-genomes cancer-genomics csv-parser ensembl genome genome-annotation genome-browser genome-sequencing genomes genomics gtf medical medicine proteomics snps vcf
Last synced: 30 Mar 2025
https://github.com/alexpreynolds/sample
Performs memory-efficient reservoir sampling on very large input files delimited by newlines
bed bioinformatics c genomics reservoir-sampling sampling
Last synced: 10 Apr 2025
https://github.com/telatin/bamtocov
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊
alignment bam bed bioinformatics coverage gff ngs
Last synced: 30 Oct 2025
https://github.com/dputhier/pygtftk
A python package and a set of shell commands to handle GTF files
bed bigwig bioinformatics cds chip-seq dna-sequences exon gene genomic genomics gtf intron ngs rna-seq splicing transcript tss tts
Last synced: 14 Jan 2026
https://github.com/sbslee/fuc
Frequently used commands in bioinformatics
api bam bed bioinformatics cli cram fasta fastq gff gtf maf sam vcf visualization
Last synced: 06 Apr 2025
https://github.com/telatin/covtobed
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
alignments bam-files bed bioconda bioinformatics bioinformatics-tool sequence-coverage
Last synced: 26 Feb 2026
https://github.com/jetbrains-research/bioinf-commons
Bioinformatics library in Kotlin
2bit bam bed bioinformatics cancellable chip-seq dataframe dataset dna-sequence fasta fastq hmm hypothesis-testing kotlin methylation mixture progress sampling
Last synced: 19 Oct 2025
https://github.com/alejandrogzi/gxf2bed
fastest GTF/GFF-to-BED converter chilling around
bed converter gene-annotation gff gtf high-performance
Last synced: 04 Jan 2026
https://github.com/alejandrogzi/bed2gtf
high-performance BED-to-GTF converter written in Rust
bed bioinformatics gene-annotation genes genome-annotation gtf
Last synced: 13 Oct 2025
https://github.com/alexpreynolds/soda
Python-based UCSC genome browser snapshot-taker and gallery-maker
bed genomics python ucsc visualization
Last synced: 30 Aug 2025
https://github.com/eloualiche/entrydatar
Public data on firm entry from the Census and the BLS in a R package
bed bls cbp employment entrepreneurship qcew
Last synced: 22 Jan 2026
https://github.com/alejandrogzi/bed2gff
cool BED-to-GFF3 converter that runs in parallel
bed bioinformatics gene-annotation genome-annotation gff3
Last synced: 13 Oct 2025
https://github.com/zmercury/cpp
C++ - Second Semester Notes
bed bicte c cpp ict notes programming sanothimi
Last synced: 07 Apr 2025
https://github.com/deeptools/deeptools_intervals
A python library for constructing interval trees with associated exon/annotation information
bed bioinformatics gtf interval-tree
Last synced: 17 Jan 2026
https://github.com/varda/varda2_preprocessing
Extract coverage information from gVCF and variants from VCF files and output in tabular format.
Last synced: 14 Jan 2026
https://github.com/yoannpa/gff3tobed
annotation-tool awk bed bioinformatics data-extraction gencode genome-annotation genomics gff gff3 hgnc
Last synced: 25 Oct 2025
https://github.com/brentp/bedder-rs
an API for intersections of genomic data
bam bed bioinformatics cram genomics vcf
Last synced: 29 Oct 2025
https://github.com/alejandrogzi/packbed
pack a .bed into overlapping components
bed bioinformatics overlapping transcript
Last synced: 13 Oct 2025
https://github.com/shencangsheng/pg_bedtools_rs
A PostgreSQL plugin for bedtools, implemented in Rust.
bed bedtools pgrx plugin position postgresql rust
Last synced: 16 Feb 2026
https://github.com/alexpreynolds/convert2bed
Convert common binary and text genomic formats to BED
Last synced: 16 May 2025
https://github.com/ArcanePlugins/BedDefender
Stop users from sleeping or changing their respawn points on your Bukkit Server
bed bukkit bukkit-plugin minecraft minecraft-bed minecraft-plugin minecraft-sleep sleep spigot
Last synced: 13 Apr 2026
https://github.com/databio/bedhost
API and UI for BEDbase
bed bioinformatics fastapi genomic-intervals genomics rest-api server
Last synced: 21 Jan 2026
https://github.com/alexpreynolds/hglive
HiGlass-backed dynamic BED gallery browser
bed bioinformatics expressjs higlass javascript react visualization
Last synced: 14 Apr 2026
https://github.com/jlgarridol/tfg-smartbeds
MINERÍA DE DATOS APLICADA A LA DETECCIÓN DE CRISIS EPILÉPTICAS - GII18.13
bed datamining ensemble epileptic-seizures manifold medical-informatics oneclasssvm pca rotation-forest scikit-learn weka
Last synced: 30 Apr 2026
https://github.com/ajimaru/octoprint-tempeta
„OctoPrint plugin that shows an ETA countdown while bed/hotend/chamber heats up or cools down.
bed chamber eta heating hotend octoprint octoprint-plugin temperature
Last synced: 18 Jan 2026
https://github.com/michaelkolesidis/sleep-is-a-lie
SLEEP IS A LIE
awake bed born-to-be-awake hours-saved lie lies sell-your-bed-man sleep sleep-is-a-lie sleeping
Last synced: 15 Mar 2026
https://github.com/jmjuanes/bedjs
Manage BED files with Node.JS (Bioinformatics)
Last synced: 31 Mar 2025
https://github.com/cumbof/opengdc.py
Python implementation of the OpenGDC software https://github.com/cumbof/OpenGDC
bed bioinformatics cancer gdc metadata tcga
Last synced: 20 Jul 2025
https://github.com/cumbof/tcga2bed
The Cancer Genome Atlas Data Extraction and Conversion Tool
bed clinical converter genomic gmql repository tcga
Last synced: 20 Jul 2025
https://github.com/initialposition/sleepblame
A spigot plugin that shows your server members that sleeping is cool
bed jar minecraft minecraft-plugin sleep spigot spigot-plugin
Last synced: 08 Aug 2025
https://github.com/badr-moufad/delta-legrand-interface
Delta Le Grand. A gigantic 6 axes delta robot with a tilting bed. Repo of the user interface.
3d-printer bed delta delta-robot desktop-app electron interface robot robotics ui
Last synced: 06 May 2026
https://github.com/MehradN/ComfyBeds
A Fabric Minecraft mod adding quality-of-life features to beds.
bed fabric fabricmc minecraft minecraft-mod qol
Last synced: 10 Mar 2025
https://github.com/badr-moufad/delta-legrand-website
Delta Le Grand. A gigantic 6 axes delta robot with a tilting bed. Repo of the website.
3d-printer bed delta-robot marke marketing robot simulation
Last synced: 04 Apr 2025
https://github.com/cumbof/opengdc
An open-source Java tool to automatically extract and convert all clinical and genomic data from the Genomic Data Commons to BED, GTF, CSV, and JSON format
bed bioinformatics csv gdc gtf json target tcga
Last synced: 20 Jul 2025
https://github.com/lukaskoeller/furnish-ios
Furnish your flat at home, not in the store.
augmented-reality bed furnish furniture home sofa
Last synced: 11 Apr 2026
https://github.com/sivkri/exon-bed-generator
Exon BED Generator: A script to download, process, and generate a BED file with exon coordinates for Homo sapiens from a GTF file
bed bed-file data-processing exon-annotation genomics genomics-analysis gtf gtf-file homo-sapiens
Last synced: 22 Mar 2025
https://github.com/jcfield-boop/homebridge-sleepmesimple
Basic Sleepme plugin that exposes the bed devices as HomeKit Thermostat
Last synced: 02 Feb 2026
https://github.com/alexpreynolds/cull-exemplars
Filter lower-scoring, neighboring genomic intervals within a specified distance
bed bedops bioinformatics interval set set-operations
Last synced: 15 Jul 2025
https://github.com/huishenlab/iscream
Make fast and memory efficient BED file queries, summaries, and matrices.
Last synced: 30 Dec 2025
