Projects in Awesome Lists tagged with bids-apps
A curated list of projects in awesome lists tagged with bids-apps .
https://github.com/connectomicslab/connectomemapper3
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
bids bids-apps bidsapp brain chuv connectome dmri docker eeg fmri parcellation pipelines python singularity
Last synced: 14 Jan 2026
https://github.com/nipreps/dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
bids bids-apps diffusion-mri magnetic-resonance-imaging preprocessing
Last synced: 06 May 2025
https://github.com/PennLINC/aslprep
Preprocessing of arterial spin labeling (ASL) data
Last synced: 29 Apr 2025
https://github.com/Medical-Image-Analysis-Laboratory/mialsuperresolutiontoolkit
The Medical Image Analysis Laboratory Super-Resolution ToolKit (MIALSRTK) consists of a set of C++ and Python processing and workflow tools necessary to perform motion-robust super-resolution fetal MRI reconstruction in the BIDS Apps framework.
bids bids-apps fetal itk mri nipype super-resolution workflow
Last synced: 29 Apr 2025
https://github.com/bids-apps/example
This an example app that can serve as a template.
Last synced: 29 May 2026
https://github.com/nidea1/e-auction
A Django(backend) & React(frontend) based full-stack real time auction application
auction auction-apps auction-website bidding bids bids-apps bidsapp django drf drf-jwt e-commerce ecommerce full-stack online react
Last synced: 23 Apr 2025
https://github.com/coganlab/ieeg_pipelines
A repo of current preprocessing methods for the Cogan Lab
bids-apps eeg ieeg matlab neuroscience python
Last synced: 14 Apr 2025
https://github.com/agahkarakuzu/bids2nf
Emits nextflow channels from Brain Imaging Data Structure data.
bids-apps bids-converter bids-format bidsapp mri neuroimaging neuroscience nextflow qmri reproducible-research
Last synced: 13 Feb 2026
https://github.com/remi-gau/bidsgnostic
BIDS app to view a dataset content and the events file content
bids bids-apps eeg fnirs ieeg meg mri pet quality-control snakebids snakemake visualization
Last synced: 23 Apr 2025
https://github.com/aaronearlerichardson/server_gui_client
A user interface for cloud based medical image storage
bids bids-apps database eeg-data flask flask-restful gui ieeg image-viewer mne-bids-pipeline mne-python python qt5-gui tkinter-gui
Last synced: 29 Apr 2026
https://github.com/constantjin/photographer-data-analysis
Python/R scripts for neural/behavioral data analysis from the Photographer Paradigm
behavioral-data bids-apps fmri-data-analysis python r
Last synced: 06 May 2026
