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Projects in Awesome Lists tagged with bidsapp
A curated list of projects in awesome lists tagged with bidsapp .
https://github.com/connectomicslab/connectomemapper3
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
bids bids-apps bidsapp brain chuv connectome dmri docker eeg fmri parcellation pipelines python singularity
Last synced: 02 Aug 2024
https://github.com/bids-apps/MRtrix3_connectome
Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.
bids bidsapp diffusion-mri mri
Last synced: 02 Aug 2024
https://github.com/bids-apps/freesurfer
BIDS app wrapping recon-all from FreeSurfer
anatomical-mri bids bidsapp mri preprocessing
Last synced: 02 Aug 2024
https://github.com/bids-apps/rsHRF
Resting state HRF estimation from BOLD-fMRI signal
bids bidsapp fmri fmri-data-analysis timeseries
Last synced: 02 Aug 2024
https://github.com/bids-apps/HCPPipelines
A BIDS App for minimal preprocessing using the HCP Pipelines
anatomical-mri bids bidsapp functional-mri mri preprocessing
Last synced: 02 Aug 2024
https://github.com/bids-apps/CPAC
BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)
bids bidsapp mri preprocessing
Last synced: 02 Aug 2024
https://github.com/bids-apps/SPM
BIDS App containing an instance of the SPM software.
Last synced: 02 Aug 2024
https://github.com/bids-apps/hyperalignment
Hyperalignment is a functional alignment method that aligns subjects' brain data in a high-dimensional space of voxels/features.
Last synced: 02 Aug 2024
https://github.com/bids-apps/baracus
Predicts brain age, based on data from Freesurfer 5.3
Last synced: 02 Aug 2024
https://github.com/bids-apps/BrainSuite
BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.
Last synced: 02 Aug 2024
https://github.com/bids-apps/PyMVPA
runs MVPA and RSA analysis BIDS bold derivative data
bids bidsapp multivariate-pattern-analysis mvpa similarity-analysis
Last synced: 02 Aug 2024
https://github.com/cpp-lln-lab/bidsMReye
BIDS app using deepMReye to decode eye motion for fMRI time series data.
bids bidsapp closember eye-tracking
Last synced: 02 Aug 2024
https://github.com/bids-apps/ndmg
BIDS app for NeuroData's MRI to Graphs pipeline
bids bidsapp connectomics diffusion-mri docker-container singularity-container
Last synced: 02 Aug 2024
https://github.com/bids-apps/nipypelines
Preprocess functional tasks in a BIDS dataset.
Last synced: 02 Aug 2024
https://github.com/bids-apps/oppni
runs fast optimization of preprocessing pipelines for BOLD fMRI
bids bidsapp functional-mri mri
Last synced: 02 Aug 2024
https://github.com/cpp-lln-lab/bidspm
an SPM centric BIDS app
automated-analysis bids bidsapp closember fmri pipeline spm12
Last synced: 02 Aug 2024
https://github.com/bids-apps/mindboggle
Improve the accuracy, precision, and consistency of automated labeling and shape analysis of human brain image data
Last synced: 02 Aug 2024
https://github.com/bids-apps/tracula
implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data.
Last synced: 02 Aug 2024
https://github.com/bids-apps/brainiak-srm
This is the BIDS-app version of the Shared Response Model (SRM) of BrainIAK
Last synced: 02 Aug 2024
https://github.com/bids-apps/antsCorticalThickness
BIDS App for calculating cortical thickness using ANTs
Last synced: 02 Aug 2024