Projects in Awesome Lists tagged with biodiversity

https://github.com/protontypes/awesome-sustainable-technology

A directory and analysis of the open source ecosystem in the areas of climate change, sustainable energy, biodiversity and natural resources. https://docs.getgrist.com/gSscJkc5Rb1R/OpenSustaintech

awesome awesome-list biodiversity carbon-emissions climate climate-change climate-data climate-science earth-science energy energy-consumption energy-data geoscience ocean photovoltaic renewable-energy renewables sustainability sustainable-development-goals wind-turbine

Last synced: 15 Dec 2024

https://github.com/treflehq/trefle-api

🍀 Trefle is a botanical JSON REST API for plants species, allowing you to search and query over all the registered species, and build the next gardening apps and farming robots.

api-rest biodiversity database farming-robots gardening-apps hacktoberfest plants plants-species trefle trefle-api

Last synced: 16 Apr 2025

https://github.com/ropensci/taxize

A taxonomic toolbelt for R

api api-wrapper biodiversity biology darwincore data nomenclature r r-package rstats taxize taxonomy

Last synced: 15 May 2025

https://github.com/regen-network/regen-ledger

:seedling: Blockchain for planetary regeneration

biodiversity blockchain carbon climate-tech cosmos-sdk credit marketplace origination tendermint

Last synced: 03 Apr 2025

https://github.com/ropensci/rgbif

Interface to the Global Biodiversity Information Facility API

api biodiversity data gbif lifewatch oscibio r r-package rstats species spocc

Last synced: 12 Apr 2025

https://github.com/pyinat/pyinaturalist

Python client for iNaturalist

api api-client biodiversity biodiversity-data biodiversity-informatics citizen-science inaturalist python

Last synced: 07 May 2025

https://github.com/prioritizr/prioritizr

Systematic conservation prioritization in R

biodiversity conservation conservation-planner optimization prioritization r rstats solver spatial

Last synced: 16 May 2025

https://github.com/globalbioticinteractions/globalbioticinteractions

Global Biotic Interactions provides access to existing species interaction datasets

biodiversity bioinformatics biology diet diseases ecoinformatics ecology eol etl-framework food-webs globi parasites pollinators species-interactions

Last synced: 07 May 2025

https://github.com/gbif/pygbif

GBIF Python client

api biodiversity data ecology gbif

Last synced: 07 May 2025

https://github.com/jeffreyevans/spatialEco

R package for spatial analysis and modelling of ecological systems

biodiversity conservation cran ecology r r-package r-spatial raster spatial vector

Last synced: 07 May 2025

https://github.com/jeffreyevans/spatialeco

R package for spatial analysis and modelling of ecological systems

biodiversity conservation cran ecology r r-package r-spatial raster spatial vector

Last synced: 12 Apr 2025

https://github.com/speciesfilegroup/taxonworks

Workbench for biodiversity informatics.

biodiversity biodiversity-informatics collections describe evolution life nomenclature ruby species taxonomy

Last synced: 09 Apr 2025

https://github.com/SpeciesFileGroup/taxonworks

Workbench for biodiversity informatics.

biodiversity biodiversity-informatics collections describe evolution life nomenclature ruby species taxonomy

Last synced: 07 May 2025

https://github.com/ropensci/rredlist

IUCN Red List API Client

api-wrapper biodiversity conservation iucn iucn-red-list r r-package rstats taxize

Last synced: 05 Apr 2025

https://github.com/belgianbiodiversityplatform/python-dwca-reader

🐍 A Python package to read Darwin Core Archive (DwC-A) files.

biodiversity biodiversity-informatics biodiversity-standards dwc gbif python

Last synced: 13 May 2025

https://github.com/jbferet/biodivMapR

biodivMapR: an R package for α- and β-diversity mapping using remotely-sensed images

biodiversity diversity-mapping hyperspectral-imaging remote-sensing sentinel-2 tropical-forest

Last synced: 07 May 2025

https://github.com/ecojulia/ecosistem.jl

Julia package for ecosystem simulation

biodiversity ecology ecosystem-simulation epidemiology julia simulation

Last synced: 12 May 2025

https://github.com/bmaitner/RBIEN

Tools for accessing the Botanical Information and Ecology Network (BIEN) database

bien biodiversity botanical ecology open-science phylogeny plant r range-maps traits

Last synced: 07 May 2025

https://github.com/BelgianBiodiversityPlatform/python-dwca-reader

🐍 A Python package to read Darwin Core Archive (DwC-A) files.

biodiversity biodiversity-informatics biodiversity-standards dwc gbif python

Last synced: 07 May 2025

https://github.com/EcoJulia/EcoSISTEM.jl

Julia package for ecosystem simulation

biodiversity ecology ecosystem-simulation epidemiology julia simulation

Last synced: 07 May 2025

https://github.com/plantnet/gbif-dl

GBIF classification dataloaders

biodiversity dataloader

Last synced: 11 Apr 2025

https://github.com/prioritizr/wdpar

Interface to the World Database on Protected Areas

biodiversity conservation cran data database protected-areas r r-package rstats spatial

Last synced: 09 Apr 2025

https://github.com/pyinat/naturtag

Tag your nature photos with iNat taxonomy and observation metadata

biodiversity biodiversity-data cli darwin-core dwc exif hierarchical-keywords inaturalist iptc photography taxonomy xmp

Last synced: 07 May 2025

https://github.com/EcoJulia/Diversity.jl

Julia package for diversity measurement

biodiversity diversity-measurement ecology julia partitioning-diversity phylogenetic-diversity

Last synced: 07 May 2025

https://github.com/daijiang/hillr

An R pakage to calculate diversity through Hill Numbers

biodiversity hill-numbers r

Last synced: 07 May 2025

https://github.com/ecojulia/diversity.jl

Julia package for diversity measurement

biodiversity diversity-measurement ecology julia partitioning-diversity phylogenetic-diversity

Last synced: 12 Apr 2025

https://github.com/Appsilon/mbaza

Save 99% of Your Time Classifying Camera-Trap Footage. Completely Free.

biodiversity camera-traps

Last synced: 04 Dec 2024

https://github.com/funecology/fundiversity

📦 R package to compute functional diversity indices efficiently

biodiversity biodiversity-indicators biodiversity-informatics functional-diversity functional-ecology functional-trait functional-traits r r-package trait trait-based traits

Last synced: 16 Jan 2025

https://github.com/mdfirman/citynet

A neural network classifier for urban soundscapes

audio-classification biodiversity deep-learning ecoacoustics ecology london neural-network soundscapes urban-ecology

Last synced: 23 Nov 2024

https://github.com/josafatburmeister/birdsongidentification

Fully automated machine learning pipeline for bird sound recognition

bioacoustics biodiversity biodiversity-informatics bird-monitoring deep-learning ecology image-classification kubeflow machine-learning ornithology sound-classification sound-classification-spectrograms sound-processing xeno-canto

Last synced: 30 Dec 2024

https://github.com/MoBiodiv/mobr

Tools for analyzing changes in diversity across scales

biodiversity conservation ecology rarefaction species statistics

Last synced: 07 May 2025

https://github.com/naturalsolutions/ecoSecrets

ecoSecrets is a web application which enables users to manage their camera traps data

biodiversity camera-traps data opensource picture python react wildlife

Last synced: 18 Mar 2025

https://github.com/chenyangkang/stemflow

A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)

adaptive-spatio-temporal-exploratory-model animal animal-movement big-data biodiversity biogeography bird-migration bird-survey ebird ecology ecology-modelling geospatial machine-learning movement movement-ecology ornithology spatio-temporal-analysis spatiotemporal spatiotemporal-dynamics species-distribution-modeling

Last synced: 19 Apr 2025

https://github.com/iiasa/ibis.iSDM

Modelling framework for creating Integrated SDMS

bayesian biodiversity integrated-framework poisson-process scenarios sdm spatial-grain spatial-predictions species-distribution-modelling

Last synced: 07 May 2025

https://github.com/gnames/gnverifier

GNverifier verifies scientific names against more than 100 biodiversity databases

biodiversity bioinformatics go golang reconciliation resolution scientific-names verification

Last synced: 07 May 2025

https://github.com/PoisotLab/SpeciesDistributionToolkit.jl

Work with species distributions in Julia

bioclim biodiversity biogeography chelsa earthenv ecology species-distribution-models

Last synced: 07 May 2025

https://github.com/AtlasOfLivingAustralia/volunteer-portal

DigiVol (Biodiversity Volunteer Portal)

ala-product-digivol biodiversity

Last synced: 07 May 2025

https://github.com/ropensci-archive/finch

:warning: ARCHIVED :warning: Read Darwin Core Archive files

biodiversity darwin-core darwincore gbif r r-package rstats

Last synced: 20 Jan 2025

https://github.com/atlasoflivingaustralia/volunteer-portal

DigiVol (Biodiversity Volunteer Portal)

ala-product-digivol biodiversity

Last synced: 12 May 2025

https://github.com/ghislainv/deforestation-maps-Mada

:pencil: Sixty years of deforestation and forest fragmentation in Madagascar

biodiversity carbon-emissions deforestation forest-fragmentation grass historical-deforestation landsat madagascar r-language reference-level tree-cover tropical-forest

Last synced: 09 Feb 2025

https://github.com/bcgov/biohubbc

Species Inventory Management System (SIMS)

biodiversity biohub env express flnr flnro keycloak material-ui object-store openshift postgis postgresql react react-leaflet sims species wlrs

Last synced: 07 May 2025

https://github.com/regen-network/regen-web

:seedling: Website and marketplace application

biodiversity carbon climate climate-tech credit marketplace origination

Last synced: 04 Apr 2025

https://github.com/Vizzuality/half-earth-v3

The Half-Earth map provides an interactive summary of progress toward Half-Earth goal, offered as a tool to help contextualise global datasets of biodiversity, human encroachment, and protection.

arcgisjs biodiversity half-earth reactjs

Last synced: 07 May 2025

https://github.com/NFrancart/doughnut-biotool

A tool to calculate a building project's impacts on biodiversity over the entire life cycle. The tool was developed as part of the "Doughnut for Urban Development" project and manual. For more information, visit https://www.home.earth/doughnut

absolute-sustainability biodiversity biosphere-integrity doughnut-economics lca sustainability

Last synced: 07 May 2025

https://github.com/prioritizr/oppr

Prioritize conservation projects for funding

biodiversity conservation conservation-prioritization optimization r-package solver

Last synced: 15 Apr 2025

https://github.com/EricMarcon/entropart

Entropy Partitioning to Measure Diversity

biodiversity diversity entropy-partitioning estimator measure species

Last synced: 07 May 2025

https://github.com/MNeverOff/wee-forest

Mapping trees of the United Kingdom, using Mapbox, TypeScript, Geopandas and data from UK's National Forest and Ancient Woodland Inventories.

biodiversity forestry geopandas geospatial mapbox typescript uk

Last synced: 16 Dec 2024

https://github.com/riparias/gbif-alert

GBIF Alert is a GBIF occurrence based alert system.

biodiversity biodiversity-data biodiversity-informatics django gbif invasive-species webapp

Last synced: 27 Nov 2024

https://github.com/ropensci/rvertnet

Wrapper to the VertNet API

api-wrapper biodiversity r r-package rstats specimen spocc vertnet

Last synced: 26 Apr 2025

https://github.com/greenpill-dev-guild/green-goods

Bringing biodiversity data onchain to better measure, track and reward impact on gardens.

attestations biodiversity biodiversity-monitoring community conservation environment ethereum foundry greenpill impact ipfs public-goods pwa regenerative smart-contracts solidity tailwindcss typescript vite web3

Last synced: 23 Jan 2025

https://github.com/boydorr/rdiversity

rdiversity - An R package for measuring similarity-sensitive diversity

biodiversity diversity-measurement partitioning-diversity r

Last synced: 13 Feb 2025

https://github.com/cadam00/prior3d

Toolset for 3D systematic conservation planning, conducting nested prioritization analyses across multiple depth levels and ensuring efficient resource allocation throughout the water column

biodiversity conservation conservation-planning depth marine-spatial-planning multidimensional-environments prioritization r r-package

Last synced: 27 Dec 2024

https://github.com/SchmidtDSE/afscgap

Python-based tools for NOAA AFSC GAP marine species surveys data

biodiversity biology fish fisheries noaa

Last synced: 07 May 2025

https://github.com/rekyt/rtaxref

:package: R client to the API of French Taxonomical Reference (TAXREF)

api api-client api-wrapper biodiversity r r-package rstats taxonomy

Last synced: 10 Apr 2025

https://github.com/dbca-wa/wastd

Western Australian Sea Turtle and Strandings Database

biodiversity conservation-bio marine-species marine-turtles marine-wildlife-incidents strandings

Last synced: 07 May 2025

https://github.com/NINAnor/oneimpact

Tools for the assessment of the cumulative impacts of anthropogenic features in ecological studies

biodiversity cumulative-impacts grass-gis r r-package

Last synced: 07 May 2025

https://github.com/sckott/gbifrb

GBIF Ruby client; docs: http://www.rubydoc.info/gems/gbifrb/0.1.0

biodiversity data ecology gbif gbif-api

Last synced: 23 Apr 2025

https://github.com/jeffreyhanson/genetic-surrogates

Data, code, and results for a research paper investigating surrogates for genetic data in conservation planning

aflp biodiversity conservation genetics plants reproducible-paper reproducible-research science

Last synced: 17 Mar 2025

https://github.com/walterxie/edna-pipeline

eDNA pipeline

biodiversity edna edna-pipeline metagenomics r

Last synced: 06 Apr 2025

https://github.com/gavinsimpson/ncse-seminar-2022

National Centre for Statistical Ecology seminar, Feb 9th, 2022

biodiversity generalized-additive-models presentation rmarkdown splines trends

Last synced: 24 Mar 2025

https://github.com/alexandregazagnes/global-biodiversity-score

CDC Biodiversité is a subsidiary of the Caisse des Dépôts et Consignation, the largest French financial institution. It is specialized in providing biodiversity-positive solutions to businesses such as ecological offsets and biodiversity footprinting.

analytics biodiversity data data-science environment ghg python

Last synced: 04 Apr 2025

https://github.com/cadam00/priorcon

Graph Community Detection Methods into Systematic Conservation Planning

biodiversity community-detection conservation conservation-planning graph-theory prioritization r r-package

Last synced: 27 Dec 2024

https://github.com/walterxie/comma

Community Matrix Analysis

biodiversity community-matrix-analysis edna r

Last synced: 28 Mar 2025

https://github.com/speciesfilegroup/taxonifi

Tools for moving biodiversity-related data around.

biodiversity csv import names nomenclature parse

Last synced: 25 Mar 2025

https://github.com/pem-humboldt/regi0

A Python package to complement and verify biological records

biodiversity geopandas pandas python requests

Last synced: 29 Apr 2025

https://github.com/gautamjajoo/biodivercity

BIODIVERCITY - Technology aided study and awareness app of species specific across different habitats

android biodiversity diversity ecology ecosystem species

Last synced: 25 Feb 2025

https://github.com/pzhaonet/rarestr

An R Package of Rarefaction-Based Species Richness Estimator

biodiversity ecology r

Last synced: 05 May 2025

https://github.com/syngenta/digitalentomologist_motiondetectioncode

Biodiversity Sensor Project (motion detection)

biodiversity sensor

Last synced: 06 Mar 2025

https://github.com/rdmpage/the-plant-list-1-1

The Plant List version 1.1

biodiversity gbif git-large-file-storage plants taxonomy

Last synced: 10 Mar 2025

https://github.com/juntyr/necsim-rust

Spatially explicit biodiversity simulations using a parallel library written in Rust

biodiversity cuda mpi necsim rust simulation

Last synced: 22 Mar 2025

https://github.com/kevcaz/seminarinteractionsdistributions

:loudspeaker: Slides of my seminar: Do biotic interactions impact species distributions?

biodiversity biogeographic networks

Last synced: 14 Mar 2025

https://github.com/chenyangkang/bird_phylogeny

Bird (avian) phylogenetic tree with bird pictures

avian biodiversity bird ecology evolution phylogenetic-tree phylogeny

Last synced: 08 May 2025

https://github.com/astrabert/virbicla

A novel ML-based binary classifier to tell viral and non-viral long reads apart in metagenomic samples.

binary-classifier biodiversity dna genomics healthcare long-read-sequencing machine-learning metagenomics microbiology oxford-nanopore virome viromics virus voting-classifier

Last synced: 05 Mar 2025

https://github.com/simonrolph/hotmoths

What if we could talk to moths then made a dating app?!? #CDE22 Hackathon entry

biodiversity hackathon moths

Last synced: 09 Apr 2025

https://github.com/jhpoelen/bats

self-documenting data publication on Bat (Chiroptera) specimen

biodiversity data natural-history-collections provenance specimen

Last synced: 08 Apr 2025

https://github.com/jhpoelen/rats

self-replicating data publication related to rat (Rattus sp.) specimen.

biodiversity data natural-history-collections provenance

Last synced: 08 Apr 2025

https://github.com/speciesfilegroup/taxonworks_homepage

Homepage for TaxonWorks

biodiversity collections digitization species taxonomy taxonworks

Last synced: 11 Apr 2025

https://github.com/rekyt/biodiversity_facets_tutorial

Repository for practical session on "Biodiversity facets in macro-space" https://s.42l.fr/biodiv https://s.42l.fr/nulldata

biodiversity biodiversity-data ecology functional-diversity functional-trait practical-sessions

Last synced: 14 Mar 2025

https://github.com/niconoe/darwinsql

DarwinCore Archives expressed as SQLite

biodiversity biodiversity-informatics biodiversity-standards gbif tdwg

Last synced: 01 Mar 2025

https://github.com/emilydolson/evo_in_space

Figures, scripts and data for paper "Spatial resource heterogeneity creates local hotspots of evolutionary potential"

avida biodiversity evolution evolutionary-computation spatial-data-analysis

Last synced: 04 Mar 2025

https://github.com/q42/nba.client

Naturalis Netherlands Biodiversity API Client

api-client biodiversity csharp naturalis

Last synced: 23 Mar 2025

https://github.com/kevcaz/biogeonet

:book: Cazelles (2016) DOI:10.1007/s12080-015-0281-9 - research compendium

biodiversity biogepgraphy markov-chain r rcpp theory

Last synced: 14 Mar 2025

https://github.com/astrabert/eolos2bios

eolos2bios is a project developed by Alessandra Berta, Astra Bertelli, Anna Fenoglio and Francesco Tosini and is aimed to tackle the Sustainability Challenge in BRAINstorm | Torino 2025 by providing a solution to the landscape problems caused by large wind turbines

biodiversity environment landscape sustainability

Last synced: 05 Mar 2025

https://github.com/damianooldoni/b3cubes-sql-examples

Collection of SQL queries to use the GBIF experimental Occurrence SQL Download API

biodiversity cube gbif gbif-api gbif-data occurrence occurrences

Last synced: 15 Jan 2025

https://github.com/juntyr/necsim-rust-docs

Documentation of the spatially explicit biodiversity simulation necsim-rust

biodiversity cuda docs mpi necsim rust simulation

Last synced: 29 Mar 2025

https://github.com/ad4gd/pilot-2-preprocessing

Tool to enrich land-use/land-cover data with historical data, OpenStreetMap and protected areas

biodiversity geospatial-data habitat-connectivity land-cover land-use landscape-connectivity landscape-ecology landscape-metrics lulc ohsome openstreetmap osm overpass-api overpass-turbo protected-planet spatial-analysis spatial-data wdpa

Last synced: 23 Mar 2025

https://github.com/vara-co/belly-button-challenge

Interactive Dashboard Exploring a database, on the biodiversity of the belly button.

biodiversity charts css data-analytics html html-css-javascipt interactive-visualization javascript javascript-library science

Last synced: 28 Mar 2025

https://github.com/frbcesab/pelagic

:package: Research Compendium for Mouillot et al. 2024's paper

biodiversity enfa pca protected-areas r

Last synced: 24 Mar 2025

https://github.com/vmikk/biodiverse-docker

Docker and Singularity images to run Biodiverse software

biodiversity docker endemism phylogenetic-diversity singularity

Last synced: 30 Jan 2025

https://github.com/pem-humboldt/wiutils

Exploration utilities for Wildlife Insights projects.

biodiversity camera-trap images matplotlib numpy pandas python seaborn trail-cameras wildlife-insights

Last synced: 02 Mar 2025

https://github.com/jhpoelen/bees

Content-based iDigBio prototype

biodiversity data ecololgical informatics provenance

Last synced: 08 Apr 2025

https://github.com/biomassives/next-supa-dashboard

approvideo and eco ops core 11-11-2024 author origin : w3labkr

biodiversity carbon eco nextjs14 server-functions supabase vercel

Last synced: 28 Feb 2025

https://github.com/dbchiro/gn_src_dbchiro

Intégration continue des données dbChiro dans une instance GeoNature

bat biodiversity chiro dbchiroweb france geonature ngo survey

Last synced: 20 Feb 2025

https://github.com/atlasoflivingaustralia/flickrharvester

Flickr harvester application

ala-product-biocache biodiversity flickr harvesting

Last synced: 12 Mar 2025

https://github.com/fbarffmann/belly-button-challenge

Built an interactive JavaScript dashboard to visualize bacterial biodiversity from belly button samples. Analyzed data from 153 participants and identified OTU 1167 as the most common bacteria.

biodiversity dashboard data-analysis data-visualization interactive-charts javascript json plotly