Projects in Awesome Lists tagged with bioengineering
A curated list of projects in awesome lists tagged with bioengineering .
https://github.com/bebop/poly
A Go package for engineering organisms.
alignment bioengineering bioinformatics codon-optimizer computational-biology dna dna-barcode dna-barcoding fasta genbank genetic-engineering go golden-gate mash molecular-biology plasmids primer-design sequence-hashing synbio synthetic-biology
Last synced: 11 Mar 2026
https://github.com/binomica-labs/splicecraft
Terminal-based plasmid map viewer, sequence editor, and cloning/mutagenesis workbench in pure Python
bioengineering biology biopython cloning genetics golden-braid microbiology moclo molecular-biology mutagenesis plasmid primer3 pure-python restriction-enzymes terminal-ui textual workbench
Last synced: 14 Jun 2026
https://github.com/barricklab/ostir
Software for predicting translation initiation rates in bacteria
bioengineering rna-structure synthetic-biology
Last synced: 03 Apr 2026
https://github.com/modenaxe/3d-muscles
Materials to reproduce the results of our paper about 3D muscle modelling.
bioengineering biomechanics geometry hip joint-models muscle muscle-model opensim scientific-papers scientific-publications scientific-research scientific-visualization
Last synced: 11 Oct 2025
https://github.com/modenaxe/muscleparamoptimizer
Scripts and models to optimize musculotendon parameters in musculoskeletal models.
bioengineering biomechanics matlab muscle muscle-parameters musculoskeletal-models musculotendon-parameters opensim optimization-technique scientific-publications scientific-research
Last synced: 25 Jul 2025
https://github.com/reubn/ecg
Portable WiFi Connected IoT ECG Monitor 📈💕
ad8232 bioengineering biohacking biomedical-engineering bpm cardiology ecg esp8266 health healthcare heart heartrate iot js medicine quantified-self react vx wearable websockets
Last synced: 03 Aug 2025
https://github.com/wenzel-lab/rio-controller
"Rio" a free and open source microfluidics controller - controls fast imaging, pressure, flow, temperature and analysis.
bioengineering controller droplet-detection droplets electronics flow-control lab-equipment microfluidics microscopy open-hardware open-source open-source-hardware pid-control raspberry-pi stroboscopic-imaging
Last synced: 13 Jan 2026
https://github.com/thecoderpinar/nanodna-nanorobot-simulation
nanoDNA-nanoROBOT-simulation: Open-source Python project for modeling and simulating DNA-based nanorobot behavior. 🧬🤖
algorithms artificial-intelligence bioengineering bioinformatics biomedical-engineering computational-biology computational-modeling data-analysis dna machine-learning molecular-biology nanotechnology neural-networks open-source python science simulation
Last synced: 30 Apr 2025
https://github.com/shaumik-ashraf/kegg-cli
A command-line interface and biochemical pathway finder based on KEGG
bioengineering bioinformatics biosystems depth-first-search kegg mit-licensed
Last synced: 06 Mar 2026
https://github.com/shaumik-ashraf/biosystemsproject
A command-line interface and biochemical pathway finder based on KEGG
bioengineering bioinformatics biosystems depth-first-search kegg mit-licensed
Last synced: 02 Apr 2025
https://github.com/j-e-j-s/aars-pipeline
A Scalable Pipeline for Discovery of aaRS Mutants to Aid in Genetic Code Expansion.
bioengineering bioinformatics biology computational-biology nextflow pipeline python synthetic-biology
Last synced: 24 Jul 2025
https://github.com/santiagortiiz/bioengineering-firmware-29-datalogger-i2c-protocol
University of Antioquia. Embedded Systems. Datalogger using I2C protocol with RTC MCP7940 & T[°C] Sensor LM75BD
bioengineering datalogger embedded-systems firmware i2c-protocol lm75bd rtc-mcp7940
Last synced: 23 Jun 2026
https://github.com/santiagortiiz/bioengineering-firmware-21-ultrasound
University of Antioquia. Sensors. Distance meassurement with an Ultrasound sensor
advanced-level bioengineering distance-meassurement firmware sensors ultrasound
Last synced: 10 Oct 2025
https://github.com/santiagortiiz/bioengineering-firmware-20-strain-gauge
University of Antioquia. Sensors. Digital scale using strain gauges
advanced-level bioengineering digital-scale firmware sensors strain-gauges
Last synced: 11 Oct 2025
https://github.com/santiagortiiz/bioengineering-firmware-22-onewire-protocol-rh-temperature
University of Antioquia. Sensors. Humidity and temperature measurement using sensors with one wire protocol
bioengineering firmware humidity one-wire-protocol sensors temperature
Last synced: 06 Jun 2026
https://github.com/santiagortiiz/bioengineering-firmware-3-flip-flops
University of Antioquia. Digital Electronics. Sequential circuits using flip flops
bioengineering digital-electronics firmware flip-flops psoc-creator
Last synced: 07 May 2026
https://github.com/santiagortiiz/bioengineering-firmware-4-adc
University of Antioquia. Digital Electronics. Sequential circuits using flip flops
bioengineering digital-electronics firmware psoc-creator
Last synced: 16 Jun 2026
https://github.com/santiagortiiz/bioengineering-firmware-7-sequence-detector
University of Antioquia. Digital Electronics. Sequence detector
bioengineering digital-electronics firmware psoc-creator
Last synced: 11 Jun 2026
https://github.com/santiagortiiz/bioengineering-firmware-11-matrix-keyboard
University of Antioquia. Digital Electronics. Keyboard controlled system
bioengineering digital-electronics firmware matrix-keyboard psoc-creator
Last synced: 13 Jun 2026
https://github.com/santiagortiiz/bioengineering-firmware-13-serial-communication
University of Antioquia. Digital Electronics. Serial Communication
bioengineering digital-electronics firmware psoc-creator
Last synced: 15 Jun 2026
https://github.com/santiagortiiz/bioengineering-firmware-9-configurable-timer
University of Antioquia. Digital Electronics. Configurable timer
bioengineering digital-electronics firmware psoc-creator
Last synced: 15 Jun 2026
https://github.com/santiagortiiz/bioengineering-firmware-16-photoswitches
University of Antioquia. Sensors. Photoswitches
bioengineering firmware photoswitches psoc-creator sensors
Last synced: 18 Jun 2026
https://github.com/santiagortiiz/bioengineering-firmware-18-accelerometer
University of Antioquia. Sensors. Angle meassurement with an accelerometer
accelerometer bioengineering firmware sensors
Last synced: 19 Jun 2026
https://github.com/santiagortiiz/bioengineering-firmware-8-password-validation
University of Antioquia. Digital Electronics. Restricted access system
bioengineering digital-electronics firmware psoc-creator
Last synced: 19 Jun 2026
https://github.com/santiagortiiz/bioengineering-firmware-12-pwm-control
University of Antioquia. Digital Electronics. PWM control
bioengineering digital-electronics firmware psoc-creator
Last synced: 19 Jun 2026
https://github.com/santiagortiiz/bioengineering-firmware-1-digital-clock
University of Antioquia. Digital Electronics. Digital Clock
bioengineering digital-electronics firmware psoc-creator
Last synced: 19 Jun 2026
https://github.com/santiagortiiz/bioengineering-firmware-19-heart-rate-meassurement
University of Antioquia. Sensors. Heart rate meassurement with pulse oximeter
bioengineering firmware heart-rate pulse-oximeter sensors
Last synced: 08 Oct 2025
https://github.com/santiagortiiz/bioengineering-firmware-17-ecg-chip-ad8232
University of Antioquia. Sensors. ECG meassurement with the micro chip AD8232
ad8232 bioengineering ecg firmware sensors
Last synced: 16 May 2026
https://github.com/santiagortiiz/bioengineering-firmware-10-restricted-access-system
University of Antioquia. Digital Electronics. Restricted access system
bioengineering digital-electronics firmware psoc-creator
Last synced: 11 Jun 2026
https://github.com/santiagortiiz/bioengineering-firmware-23-pressure-monitoring
University of Antioquia. Sensors. Medical gas monitoring system
advanced-level bioengineering firmware i2c-protocol mcp7940 pressure sensors
Last synced: 11 Jul 2025
https://github.com/santiagortiiz/bioengineering-firmware-28-spi-protocol-with-imu-mpu9265
University of Antioquia. Embedded Systems. SPI communication protocol with an IMU (Innertial Movement Unit)
advanced-level bioengineering eeprom embedded-systems fifo firmware imu-mpu9265 spi-protocol
Last synced: 11 Sep 2025
https://github.com/santiagortiiz/bioengineering-firmware-6-radiosurgery-robot
University of Antioquia. Digital Electronics. Radiosurgery Robot
bioengineering digital-electronics firmware psoc-creator
Last synced: 11 Sep 2025
https://github.com/santiagortiiz/bioengineering-firmware-14-input-capture
University of Antioquia. Digital Electronics. Input Capture
bioengineering digital-electronics firmware input-capture psoc-creator
Last synced: 19 Jun 2025
https://github.com/santiagortiiz/bioengineering-firmware-2-piano
University of Antioquia. Digital Electronics. Piano
bioengineering digital-electronics firmware psoc-creator
Last synced: 19 Jul 2025
https://github.com/santiagortiiz/bioengineering-firmware-15-adc-resolution
University of Antioquia. Sensors. ADC resolution
adc bioengineering firmware psoc-creator resolution sensors
Last synced: 17 Oct 2025
https://github.com/santiagortiiz/bioengineering-firmware-24-real-reference-voltage
University of Antioquia. Sensors. Meassurement of the real reference voltage for a PSoC
bioengineering firmware real-vref sensors
Last synced: 13 Sep 2025
https://github.com/santiagortiiz/bioengineering-firmware-27-memory-explorer
University of Antioquia. Embedded Systems. Regions: Code, Flash, SRAM, Peripherals, external RAM, external device, system
advanced-level bioengineering embedded-systems firmware memory-explorer memory-regions
Last synced: 11 Jun 2026
https://github.com/santiagortiiz/bioengineering-firmware-26-sensing-system-adjustable-alarms
University of Antioquia. Embedded Systems. Sensing system with adjustable alarms
advanced-level bioengineering embedded-systems firmware power-control sensors
Last synced: 06 Sep 2025
https://github.com/santiagortiiz/bioengineering-firmware-25-divide-conquer-guide
University of Antioquia. Embedded Systems. Example of Divide and Conquer for C Microcontroller projects.
advanced-level bioengineering divide-and-conquer embedded-systems firmware
Last synced: 08 Sep 2025