Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
https://github.com/Dana-Farber-AIOS/pathml
Tools for computational pathology
biomedical-image-processing computational-pathology deep-learning digital-pathology fluorescence-microscopy-imaging histopathology image-analysis machine-learning microscopy pathml pathology python pytorch research spatial-transcriptomics
Last synced: 07 May 2024
https://github.com/zudi-lin/pytorch_connectomics
PyTorch Connectomics: segmentation toolbox for EM connectomics
biomedical-image-processing computer-vision connectomics deep-learning microscopy neuroscience pytorch segmentation
Last synced: 07 May 2024
https://github.com/seung-lab/cloud-volume
Read and write Neuroglancer datasets programmatically.
big-data biomedical-image-processing chunked-image cloud connectomics electron-microscopy gcs large-image matrix mesh microscopy microscopy-images neuroglancer numpy python s3 serverless skeletons tensor volumetric-data
Last synced: 07 May 2024
https://github.com/mlcommons/GaNDLF
A generalizable application framework for segmentation, regression, and classification using PyTorch
biomedical-image-processing classification clinical-workflow data-augmentation deep-learning framework machine-learning medical-image-analysis medical-imaging medical-informatics pytorch regression segmentation
Last synced: 16 Apr 2024
https://cambridgeltl.github.io/visual-med-alpaca/
Visual Med-Alpaca is an open-source, multi-modal foundation model designed specifically for the biomedical domain, built on the LLaMa-7B.
biomedical biomedical-image-processing foundation-model large-language-models multimodal
Last synced: 06 Apr 2024
https://github.com/OpenEIT/OpenEIT
Python based dashboard for real-time Electrical Impedance Tomography including image reconstruction using Back Projection, Graz Consensus and Gauss Newton methods
biomedical-image-processing biomedical-instrumentation eit electrical-impedance-tomography image-reconstruction inverse-problems python tomography
Last synced: 05 Apr 2024
