Projects in Awesome Lists tagged with bowtie2

A curated list of projects in awesome lists tagged with bowtie2 .

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https://github.com/biowasm/biowasm

WebAssembly modules for genomics

awk bedtools bioinformatics bowtie2 genomics grep javascript jq minimap2 samtools sed seqtk webassembly

Last synced: 12 Apr 2025

https://github.com/biobakery/kneaddata

Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

biobakery bowtie2 kneaddata public quality-control tools

Last synced: 05 Apr 2025

https://github.com/juke34/aline

Nextflow Alignment Pipeline - DNAseq RNAseq

bbmap bowtie bowtie2 bwa bwa-mem bwa-sw graphmap2 hisat2 kallisto minimap2 nextflow ngmlr novoalign nucmer star sublong subread

Last synced: 05 Mar 2025

https://github.com/tiagofilipe12/patlasflow

A pipeline to run mapping, mash screen and assembly methods for pATLAS.

bowtie2 mash nextflow patlas pipeline samtools

Last synced: 06 Apr 2025