Projects in Awesome Lists tagged with bulk-rna-seq
A curated list of projects in awesome lists tagged with bulk-rna-seq .
https://github.com/Starlitnightly/omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
bioinformatics bulk-rna-seq omics single-cell
Last synced: 16 Mar 2025
https://github.com/bcgsc/rna-bloom
:hibiscus: reference-free transcriptome assembly for short and long reads
bioinformatics-tool bulk-rna-seq denovo-assembly nanopore-sequencing pacbio-sequencing rna-seq single-cell-rna-seq
Last synced: 19 Apr 2025
https://github.com/bcgsc/RNA-Bloom
:hibiscus: reference-free transcriptome assembly for short and long reads
bioinformatics-tool bulk-rna-seq denovo-assembly nanopore-sequencing pacbio-sequencing rna-seq single-cell-rna-seq
Last synced: 13 Nov 2024
https://github.com/earmingol/cell2cell
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
bioinformatics bulk-rna-seq cell-cell-communication cell-cell-interaction computational-biology machine-learning rna-seq rnaseq sc-rna-seq single-cell single-cell-rna-seq
Last synced: 15 Dec 2024
https://github.com/carpentries-incubator/workflows-nextflow
Workflow management with Nextflow and nf-core
bulk-rna-seq carpentries-incubator english lesson nextflow nf-core pre-alpha rna-seq-analysis workflow-management
Last synced: 19 Feb 2025
https://github.com/carpentries-incubator/bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
bioconductor bulk-rna-seq carpentries-incubator english hacktoberfest lesson life-sciences pre-alpha r rna-seq-analysis
Last synced: 29 Dec 2024
https://github.com/nasqar/deseq2shiny
a web-based R shiny application that wraps DESeq2 R package
bioinformatics bulk-rna-seq deseq2 r rna-seq rna-seq-analysis rshiny shiny shinyapps visualization webapplication
Last synced: 04 Dec 2024
https://github.com/lieberinstitute/habenula_pilot
habenulaPilot project code repository
bulk-rna-seq habenula rna-seq schizophrenia snrna-seq
Last synced: 23 Mar 2025
https://github.com/stef1949/rna-seq-preprocessing-scripts
This repository contains a collection of preprocessing scripts designed to help streamline data preparation tasks.
bulk-rna-seq docker powershell preprocessing python
Last synced: 22 Feb 2025
