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Projects in Awesome Lists tagged with cell-segmentation
A curated list of projects in awesome lists tagged with cell-segmentation .
https://github.com/mouseland/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
cell-biology cell-segmentation segmentation
Last synced: 01 Oct 2024
https://github.com/MouseLand/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
cell-biology cell-segmentation segmentation
Last synced: 01 Aug 2024
https://github.com/qupath/qupath
QuPath - Bioimage analysis & digital pathology
bioimage-analysis bioimage-informatics cell-analysis cell-segmentation computational-pathology digital-pathology groovy histology image-processing imagej javafx machine-learning opencv pathology tissue-microarray-analysis whole-slide-imaging
Last synced: 26 Sep 2024
https://github.com/stardist/stardist
StarDist - Object Detection with Star-convex Shapes
bioimage-analysis cell-segmentation deep-learning nuclei-segmentation object-detection python
Last synced: 02 Aug 2024
https://github.com/TissueImageAnalytics/tiatoolbox
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
cell-classification cell-segmentation computational-pathology deep-learning digital-pathology histopathology image-analysis machine-learning medical-image-analysis python stain-normalization tissue-analysis tissue-segmentation whole-slide-imaging
Last synced: 02 Aug 2024
https://github.com/computational-cell-analytics/micro-sam
Segment Anything for Microscopy
cell-segmentation microscopy-images mitochondria-segmentation napari nuclei-segmentation segment-anything segmentation
Last synced: 03 Aug 2024
https://github.com/oist/usiigaci
Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning
cell-biology cell-segmentation keras machine-learning mask-rcnn matplotlib python3 resnet-101 tensorflow tracking trackpy visualization
Last synced: 03 Aug 2024
https://github.com/nadeemlab/DeepLIIF
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23]
ai-ready cell-biology cell-segmentation cloud-native-applications datasets deep-learning image-segmentation immunohistochemical-images immunohistochemistry multiplex multitask-learning pathology pathology-gan pathology-image pytorch segmentation
Last synced: 02 Aug 2024
https://github.com/ChristophReich1996/Cell-DETR
Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
attention bibm-2020 cell-detr cell-segmentation deep-learning instance-segmentation synthetic-biology system-biology transformer
Last synced: 02 Aug 2024
https://github.com/royerlab/ultrack
Cell tracking and segmentation software
cell-segmentation cell-tracking cell-tracking-challenge gurobi
Last synced: 18 Aug 2024
