https://github.com/quantumjot/btrack

Bayesian multi-object tracking

bayesian btrack cell-tracking kalman-filter multi-object-tracking object-tracking optimization tracking-algorithm

Last synced: 12 Dec 2025

https://github.com/royerlab/ultrack

Cell tracking and segmentation software

cell-segmentation cell-tracking cell-tracking-challenge gurobi

Last synced: 03 Jul 2025

https://github.com/lowe-lab-ucl/arboretum

Track and lineage visualization with btrack and Napari :evergreen_tree:

btrack cell-tracking napari visualization

Last synced: 11 Mar 2026

https://github.com/alphonsg/epic-bbox-cell-tracking

Harness deep learning and bounding boxes to perform object detection, segmentation, tracking and more.

cell-detection cell-migration cell-tracking deep-learning object-detection object-tracking

Last synced: 07 Sep 2025

https://github.com/royerlab/ultrack-i2k2024

Ultrack From Images to Knowledge (I2k) 2024 Workshop

cell-tracking cell-tracking-challenge ultrack

Last synced: 02 Feb 2026

https://github.com/ocbe-uio/cellmaptracer

A user-friendly tracking system for long-term migratory and proliferating cells

cell-division cell-tracking linux macos matlab matlab-gui windows

Last synced: 04 May 2026

https://github.com/royerlab/tracksdata

A common data structure and basic tools for multi-object tracking.

cell-tracking cell-tracking-challenge multi-object-tracking tracking

Last synced: 31 Jul 2025

https://github.com/jvelezmagic/undergraduate_research_project

antibiotic-resistance bacteria bookdown cell-tracking filamentation r unam

Last synced: 15 Mar 2025

https://github.com/ocbe-uio/cellmigration

An R package for tracking cells and analyzing their trajectories

bioconductor-package cell-tracking r-package shiny trajectory-analysis

Last synced: 06 Jul 2025

https://github.com/laulauthom/knimetgmm_reloaded

Knime workflow to facilitate segmentation and tracking in 3D + time cell images using the TGMM 1.0 software by the Keller lab (https://www.janelia.org/lab/keller-lab).

cell-tracking microscopy segmentation tgmm

Last synced: 25 Jul 2025

https://github.com/royerlab/ultrack-atini-2025

Ultrack's hands-on exercise for Advanced Techniques in NeuroImaging (ATiNI) 2025

cell-segmentation cell-tracking cell-tracking-challenge

Last synced: 03 Feb 2026