https://github.com/huangzhii/salmon

SALMON: Survival Analysis Learning with Multi-Omics Neural Networks

co-expression deep-learning machine-learning neural-networks survival-analysis

Last synced: 15 May 2025

https://github.com/sigven/oncoenrichr

Explore the cancer relevance of your gene list

cancer cancer-hallmark-evidence cancer-survival co-expression crispr-target disease-gene-association functional-enrichment-analysis genesets high-throughput-screening pathway-enrichment-analysis prioritization protein-complexes protein-protein-interaction proteins report-generator tcga-data tissue-enrichment-analysis

Last synced: 31 May 2026

https://github.com/mikelkou/fava

Functional Associations using Variational Autoencoders

co-expression deep-learning networks networks-biology proteomics single-cells

Last synced: 12 Mar 2026

https://github.com/lingfeiwang/normalisr

Causal inference, differential expression, and co-expression for scRNA-seq

association-testing causal-inference co-expression differential-expression gene-regulatory-network hypothesis-testing normalization scrna-seq single-cell single-cell-crispr-screening

Last synced: 03 Aug 2025

https://github.com/huangzhii/tsunami

An R software for Gene Co-Expression Analysis

co-expression gene preprocessing

Last synced: 15 May 2025

https://github.com/deib-geco/genenetfusion

biomarkers co-expression complex-networks gene-expression-profiles gene-network-inference network-fusion

Last synced: 10 Apr 2025

https://github.com/llrs/tfm

Code of my master project using WGCNA.

co-expression master-thesis wgcna

Last synced: 08 Apr 2025