Projects in Awesome Lists tagged with codon-optimization
A curated list of projects in awesome lists tagged with codon-optimization .
https://github.com/edinburgh-genome-foundry/dnachisel
:pencil2: A versatile DNA sequence optimizer
bioinformatics codon-optimization dna-optimization sequence-design synbio synthetic-biology
Last synced: 14 May 2025
https://github.com/adibvafa/codontransformer
CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.
bioinformatics biotechnology codon codon-optimization codon-optimizer computational-biology deep-learning gene-expression machine-learning synthetic-biology
Last synced: 12 Apr 2025
https://github.com/edinburgh-genome-foundry/python_codon_tables
:bar_chart: Codon usage tables in code-friendly format + Python bindings
bioinformatics codon-optimization codon-usage synbio
Last synced: 12 Dec 2025
https://github.com/Edinburgh-Genome-Foundry/python_codon_tables
:bar_chart: Codon usage tables in code-friendly format + Python bindings
bioinformatics codon-optimization codon-usage synbio
Last synced: 09 Jan 2026
https://github.com/koeng101/dnadesign
A Go package for designing DNA.
bioinformatics codon-optimization codon-usage computational-biology dna-barcode dna-folding fasta fastq genbank genetic-engineering go goldengate molecular-biology pileup plasmids rna-folding sam synbio synthetic-biology
Last synced: 13 Apr 2025
https://github.com/stracquadaniolab/cubseq-nf
CUBseq analyses codon usage bias from RNA-seq data, producing robust CUB estimates that account for variants transcriptome-wide and in highly expressed genes.
codon-bias codon-optimization codon-usage nextflow rnaseq transcriptomics
Last synced: 17 Oct 2025
