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Projects in Awesome Lists tagged with constraint-based-modeling
A curated list of projects in awesome lists tagged with constraint-based-modeling .
https://github.com/sysbiochalmers/raven
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
constraint-based-modeling gap-filling genome-scale-models human-metabolism metabolic-engineering metabolic-models metabolic-reconstruction sysbio systems-biology
Last synced: 21 Dec 2024
https://github.com/lcsb-biocore/cobrexa.jl
Constraint-Based Reconstruction and EXascale Analysis
cobra constraint-based-modeling exascale exascale-analysis high-performance hpc julia
Last synced: 02 Dec 2024
https://github.com/stelmo/escher.jl
Visualization of metabolic models in Makie.
cobra constraint-based-modeling julia visualization
Last synced: 09 Nov 2024
https://github.com/sysbiochalmers/yarrowia_lipolytica_w29-gem
Genome-scale model of Yarrowia lipolytica.
constraint-based-modeling genome-scale-models metabolic-engineering metabolic-models metabolic-network metabolic-reconstruction omics-data-integration stoichiometric-reactions systems-biology yarrowia-lipolytica
Last synced: 03 Dec 2024
https://github.com/htpusa/moomin
MOOMIN is a tool for analysing differential expression data
constraint-based-modeling differential-expression gene-expression matlab metabolic-network moomin
Last synced: 02 Dec 2024
https://github.com/stelmo/equilibrator.jl
A lightweight interface to eQuilibrator and equilibrator_api through Julia.
constraint-based-modeling equilibrator julia thermodynamics
Last synced: 23 Oct 2024
https://github.com/htpusa/moomin.jl
From differential gene expression to metabolic changes
constraint-based-modeling differential-expression gene-expression metabolic-models transcriptomics
Last synced: 02 Dec 2024
https://github.com/sysbiochalmers/rhto-gem
Genome-scale metabolic model of Rhodotorula toruloides
constraint-based-modeling genome-scale-models metabolic-engineering metabolic-reconstruction sysbio systems-biology yeast
Last synced: 03 Dec 2024
https://github.com/sysbiochalmers/gecko2_simulations
Collection of scripts for reproduction of simulation results in "Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0".
constraint-based-modeling enzyme-constraints metabolism
Last synced: 03 Dec 2024
https://github.com/sysbiochalmers/cellfactory-ecyeastgem
Code and data for in silico strain design for enhanced production of +100 typical bio-products with yeast as a cell-factory. Predictions are based on the ecYeastGEM model avaiable at ecModels.
cell-factory constraint-based-modeling enzyme-constraints yeast
Last synced: 03 Dec 2024
https://github.com/nyxflower/memo
Constraint-based metabolic modelling with sparse IPOPT
constraint-based-modeling interior-point-optimizer metabolic-models non-linear-optimization
Last synced: 09 Nov 2024
