Projects in Awesome Lists tagged with count-matrix
A curated list of projects in awesome lists tagged with count-matrix .
https://github.com/epigen/spilterlize_integrate
A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices resulting from next-generation sequencing (NGS) experiments (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including confounding factor analysis and diagnostic visualizations.
atac-seq batch-effect bioinformatics biomedical-data-science chip-seq confounding-effects count-matrix dimensionality-reduction integration ngs normalization pipeline rna-seq snakemake visualization workflow
Last synced: 24 Aug 2025
https://github.com/showteeth/debpeak
DEbPeak - Analyze and integrate multi-omics to unravel the regulation of gene expression.
analysis atac-seq chip-seq count-matrix differential-expression geo integration m6a-seq peak-related rna-seq transcription-factors visualization
Last synced: 01 Apr 2026
