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Projects in Awesome Lists tagged with crispr

A curated list of projects in awesome lists tagged with crispr .

https://github.com/ctskennerton/minced

Mining CRISPRs in Environmental Datasets

bioinformatics crispr

Last synced: 21 Mar 2025

https://github.com/RicardoGEsteves/omniscient

Cutting-edge Full-stack AI Platform delivered as a SaaS (Software as a Service). Built on a robust technology stack, integrated with powerful APIs such as OpenAI and Replicate, offers a seamless experience for code generation, conversation simulation, image creation, music composition, and video generation.

axios clerk crispr nextjs openai postgresql prisma react react-hook-form react-hot-toast react-markdown replicate shadcn-ui stripe supabase tailwindcss typescript zod zustand

Last synced: 24 Mar 2025

https://github.com/ricardogesteves/omniscient

Cutting-edge Full-stack AI Platform delivered as a SaaS (Software as a Service). Built on a robust technology stack, integrated with powerful APIs such as OpenAI and Replicate, offers a seamless experience for code generation, conversation simulation, image creation, music composition, and video generation.

axios clerk crispr nextjs openai postgresql prisma react react-hook-form react-hot-toast react-markdown replicate shadcn-ui stripe supabase tailwindcss typescript zod zustand

Last synced: 09 Apr 2025

https://github.com/soedinglab/spacepharer

SpacePHARER CRISPR Spacer Phage-Host pAiRs findER

bioinformatics crispr host-pathogen sequence-analysis

Last synced: 27 Apr 2025

https://github.com/ctskennerton/crass

The CRISPR assembler

bioinformatics crispr

Last synced: 01 Aug 2025

https://github.com/fulcrumgenomics/guide-counter

A better, faster way to count guides in CRISPR screens.

bioinformatics crispr genomics

Last synced: 05 Sep 2025

https://github.com/rraadd88/beditor

A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more

base-editing crispr genome-wide-targeted-mutagenesis guide-rna-library

Last synced: 22 Jun 2025

https://github.com/emanuelgoncalves/crispy

Python module to analyse CRISPR-based libraries

crispr gaussian python sklearn

Last synced: 23 Oct 2025

https://github.com/bmds-lab/Crackling

CRISPR, faster, better – The Crackling method for whole-genome target detection

bioinformatics crispr crispr-analysis crispr-design efficacy issl specificity

Last synced: 05 May 2025

https://github.com/j-andrews7/crisprball

An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.

crispr crispr-screen data-visualization interactive-visualizations mageck plotly r screening shiny

Last synced: 28 Apr 2025

https://github.com/mpusp/snakemake-crispr-guides

A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.

bioinformatics-pipeline crispr crispr-design guide-rna-library python3 r-markdown snakemake snakemake-workflow workflow

Last synced: 27 Apr 2026

https://github.com/emanuelgoncalves/dtrace

Integration of pharmacological and drop-out CRISPR-Cas9 screens

bioinformatics crispr drug-targets

Last synced: 07 Oct 2025

https://github.com/pinellolab/crispr-hawk

Variant- and Haplotype-aware CRISPR guide design toolkit

bioinformatics crispr crispr-design genome-editing

Last synced: 08 Jun 2026

https://github.com/gtca/crispra_zga

Code for CRISPR activation screen with single-cell RNA-seq readout studying zygotic genome activation

crispr scrna-seq

Last synced: 07 Jul 2025

https://github.com/althonos/diced

A Rust reimplementation of the MinCED method for identifying CRISPRs in full or assembled genomes.

bioinformatics crispr genomics python-bindings python-library rust-library

Last synced: 02 Aug 2025

https://github.com/therook/multiplexedplasmidbuilder

To combine and modify genbank files to construct multiplexed CRISPR plasmids.

biohacking biology biopython crispr python

Last synced: 13 Jun 2026

https://github.com/epigen/macrophage-regulation

Integrated time-series analysis and high-content CRISPR screening delineate the dynamics of macrophage immune regulation

atac-seq bioinformatics crispr crop-seq epigenomics immunology perturb-seq perturbations rna-seq scrna-seq systems-biology systems-immunology time-series transcriptomics

Last synced: 03 Aug 2025

https://github.com/sandialabs/cascollect

A pipeline for the detection of Cas genes and CRISPR arrays from unassembled raw illumina sequencing reads

crispr dna dna-seq protein rna scr-2420 seed-expansion

Last synced: 31 Aug 2025

https://github.com/asistradition/getcrispry

CRISPR Target Design

crispr design guide rna

Last synced: 28 May 2026

https://github.com/jaydu1/crispyx

Streamlining CRISPR Screen Analysis

crispr differntial-gene-expression on-disk single-cell

Last synced: 20 Apr 2026

https://github.com/cancerit/pygas

python Guide aligned Sequences

alignment bioinformatics crispr

Last synced: 19 May 2026

https://github.com/chrisnelsonlab/crispr-tn5

Code for analysis of unbiased sequencing of CRISPR-mediated genome editing

crispr matlab tns

Last synced: 25 Feb 2026

https://github.com/mvinyard/sglib

guideID: python tools to find PAM sequences

crispr crispr-screens

Last synced: 14 Mar 2025

https://github.com/sanger-cellular-informatics/py-crispr-analyser

Python module and scripts to analyse CRISPRs and off-targets from a genome

bioinformatics crispr cuda-support genome

Last synced: 14 Jan 2026

https://github.com/scbirlab/crispio

🌱 Designing CRISPRi experiments in bacteria

bacteria bacterial-genomes bioinformatics crispr crispri fitness guide-rna-library

Last synced: 14 Jan 2026

https://github.com/drpatelh/nf-core-sgrnaquant

UNDER CONSTRUCTION: CRISPR sgRNA quantification pipeline

counting crispr crispr-analysis nextflow nf-core pipeline quantification sgrna workflow

Last synced: 07 Mar 2026

https://github.com/antonkulaga/crispr

CRISPR evaluation code

adam bionformatics crispr spark

Last synced: 17 May 2026

https://github.com/manueltgn/crispr-hawk

Variant- and Haplotype-aware CRISPR guide design toolkit

bioinformatics crispr crispr-design genome-editing

Last synced: 10 Sep 2025

https://github.com/ntfargo/genofusion

Enhance your fundamental molecular biology techniques to yield better outcomes.

bioinformatics crispr dna genetics opensource petproject rna sequenceanalysis

Last synced: 09 Sep 2025

https://github.com/mvinyard/pool-sharq

Python wrapper for the Broad Institute GPP's poolq software

crispr python

Last synced: 21 May 2026

https://github.com/bmascat/rna-seq-proteomics-pipeline

Multi-omics analysis of LFQ proteomics and transcriptomics of an ALMS1 gene knockout cell model after TGF-B pathway stimulation.

crispr data-integration enrichment-analysis multiomics proteomics rna-seq

Last synced: 18 Mar 2025

https://github.com/pranav-swarup/geneseq

A tool to identify CRISPR gRNA target sites in genes and associate them with known diseases and phenotypes.

crispr crispr-cas9 crispr-target genomics python3

Last synced: 09 Jul 2025

https://github.com/ofir-frd/analysis-of-ngs-data-for-crispr-hdr-experiments

Analysis of Next-Generation Sequencing(NGS) data for Clustered Regularly Interspaced Short Palindromic Repeats(CRISPR) Homology Directed Repair(HDR) experiments

crispr hdr ngs

Last synced: 14 May 2026

https://github.com/jcaperella29/perturb_seq_app

JCAP CRISPR Mixscape Pipeline is a user-friendly R Shiny application for interactive single-cell CRISPR screen analysis. It enables rapid quality control, visualization, and differential expression discovery using Mixscape and Seurat, all in a point-and-click environment. Ideal for researchers working with Perturb-seq data.

bioinformatics crispr gene-editing perturb-seq screening seurat shiny single-cell

Last synced: 19 Aug 2025

https://github.com/scbirlab/ogilo

⛓️ Automating construction of oligo library sequences for oligo array synthesis.

crispr crispr-design molecular-biology oligo-design oligonucleotide synthetic-biology

Last synced: 08 Mar 2026