https://github.com/tbepler/topaz

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

cnn cryo-em cryoem denoising machine-learning object-detection particle-picking positive-unlabeled pytorch topaz topaz-denoise topaz-em

Last synced: 08 Apr 2025

https://github.com/hbhargava7/cryoem-data-simulation

Python3 tools for simulating cryoEM particle data.

biophysics cryoem cryoem-data-simulation simulated-particles structural-biology

Last synced: 02 Apr 2025

https://github.com/bioinsilico/em_filter

Keras scripts

convolutional-neural-networks cryoem filter micrograph

Last synced: 03 Mar 2025

https://github.com/cerit-sc/scipion-docker

Scipion (Cryo em image processing framework (https://scipion.i2pc.es/)) adapted to run in Kubernetes.

cryo-em cryoem cuda desktop kubernetes scipion vnc

Last synced: 06 Dec 2024

https://github.com/rdk31/cryoem-tools-nix

cryoem flake nix

Last synced: 07 Apr 2025

https://github.com/cerit-sc/scipion-portal

Web Portal for deploying Scipion-in-K8S instances (https://github.com/CERIT-SC/scipion-docker)

cryo-em cryoem kubernetes scipion web-portal

Last synced: 27 Mar 2025