Projects in Awesome Lists tagged with cwl-workflow
A curated list of projects in awesome lists tagged with cwl-workflow .
https://github.com/4dn-dcic/tibanna
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
aws aws-lambda aws-step-function bioinformatics conda cwl cwl-workflow docker ot2od032119 pipelines snakemake snakemake-workflow u01ca200059 wdl wdl-workflow
Last synced: 18 Jan 2026
https://github.com/Duke-GCB/calrissian
CWL on Kubernetes
cwl cwl-workflow cwl-workflows kubernetes
Last synced: 10 Mar 2025
https://github.com/stjudecloud/workflows
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
bioinformatics bioinformatics-workflows computational-biology cromwell cwl cwl-workflow genomics next-generation-sequencing stjudecloud wdl wdl-workflow workflow workflow-engine workflows
Last synced: 19 Feb 2026
https://github.com/ncbi/pm4ngs
Project Manager for NGS data analysis
bioinformatics chipexo chipseq cwl-workflow next-generation-sequencing ngs-analysis ngs-pipeline rnaseq
Last synced: 04 Jul 2025
https://github.com/otiai10/hotsub
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
aws batch-job bioinformatics cwl cwl-workflow docker docker-machine etl-framework gcp wdl wdl-workflow workflow workflow-engine
Last synced: 16 Oct 2025
https://github.com/ncbi/cwl-ngs-workflows-cbb
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
cwl-workflow ngs ngs-analysis ngs-pipeline
Last synced: 31 Jul 2025
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation
This workflow performs annotation on SNV and INDEL VCFs.
cwl cwl-workflow indel-annotation pcawg snv-annotation
Last synced: 10 Mar 2025
https://github.com/msk-access/cwl_subworkflows
A list of subworkflows used for MSK-ACCESS data processing.
common-workflow-language cwl-workflow workflow
Last synced: 10 Feb 2026
https://github.com/stjudecloud/rfcs
Request for Comments (RFCs) on the St. Jude Cloud Project.
bioinformatics bioinformatics-pipeline computational-biology cwl cwl-workflow discussion genomics proposal rfcs stjudecloud wdl wdl-workflow workflow workflow-engine
Last synced: 15 Feb 2026
https://github.com/stevekm/toil-elk
Template for running Toil on LSF HPC with ELK stack logging
cwl cwl-workflow elasticsearch elk-stack filebeat hpc logstash lsf toil
Last synced: 29 Nov 2025
https://github.com/GusEllerm/GIS_IndexGen
Prototype implementation of LivePaper with GIS indices as the subject.
cwl cwl-workflow gis livedata livepaper remote-sensing
Last synced: 10 Mar 2025
https://github.com/terradue/ogc-eo-application-package-hands-on
OGC EO Application Package Hands-on
cwl cwl-workflow earth-observation eo python sentinel-2
Last synced: 15 Apr 2026
https://github.com/Terradue/ogc-eo-application-package-hands-on
OGC EO Application Package Hands-on
cwl cwl-workflow earth-observation eo python sentinel-2
Last synced: 10 Mar 2025
https://github.com/eoap/ogc-api-processes-with-zoo
OGC API Processes with ZOO Project
Last synced: 31 Jan 2026
https://github.com/gusellerm/gis_indexgen
Prototype implementation of LivePaper with GIS indices as the subject.
cwl cwl-workflow gis livedata livepaper remote-sensing
Last synced: 16 Jan 2026
https://github.com/msk-access/uncollapsed_bam_generation
Workflow for making MSK-ACCESS standard binary alignment mapping file.
cfdna ctdna cwl cwl-workflow umi workflow
Last synced: 10 Feb 2026
https://github.com/msk-access/bam_collapsing
Workflow for collapsing of standard binary alignment mapping file generated by MSK-ACCESS
bam-collapsing ctdna cwl-workflow duplex fgbio msk-access workflow
Last synced: 10 Feb 2026
https://github.com/jcaperella29/bwa_samtools_cwl_flow
a common language workflow , workflow to process Fastq files
bioinformatics cwl-workflow next-generation-sequencing
Last synced: 07 Mar 2026
