Projects in Awesome Lists tagged with cytometry
A curated list of projects in awesome lists tagged with cytometry .
https://github.com/whitews/flowkit
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
cytometry data-science fcs fcs-files flow-cytometry flow-cytometry-analysis flowjo gatingml immunology python
Last synced: 02 Apr 2026
https://github.com/whitews/flowio
A Python library for reading and writing Flow Cytometry Standard (FCS) files
cytometry fcs fcs-files flow-cytometry flow-cytometry-analysis flow-cytometry-files immunology python
Last synced: 06 Apr 2025
https://github.com/lcsb-biocore/gigasom.jl
Huge-scale, high-performance flow cytometry clustering in Julia
artifical-neural-network artificial-intelligence clustering clustering-methods cytof cytometry flow-cytometry huge-scale immunology large-scale mass-cytometry neural-networks self-organizing-map som
Last synced: 11 Apr 2025
https://github.com/exaexa/embedsom
Fast embedding ot multidimensional datasets, great for cytometry data
cytometry rstats som visualization
Last synced: 22 Apr 2025
https://github.com/whitews/flowutils
FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
cytometry fcs fcs-files flow flow-cytometry flow-cytometry-analysis flow-cytometry-data python
Last synced: 22 Jul 2025
https://github.com/gszep/flowatlas.jl
an interactive explorer for flow cytometry data
annotation clustering cytometry dimensionality-reduction flowjo interactive-visualizations julia single-cell
Last synced: 14 Apr 2025
https://github.com/bodenmillergroup/histocat-web
Histology Topography Cytometry Analysis Toolbox (histoCAT) for Web.
bioinformatics cytometry data-visualization fastapi imc python scientific segmentation single-cell toolbox vue
Last synced: 30 Apr 2025
https://github.com/gitdemont/ifc
Tools for Imaging Flow Cytometry
cytometry cytometry-data flow flow-cytometry flow-cytometry-analysis flow-cytometry-data flow-cytometry-files ifc image imaging-flow-cytometry imaging-flow-cytometry-data microscopy r
Last synced: 18 Mar 2025
https://github.com/pritampanda15/proteomics
Flow Cytometry analysis in R | Proteomics
cytoexplorer cytometry cytometry-analysis-pipeline flow flowcytometry
Last synced: 03 Feb 2026
https://github.com/niaid/hdstim
HDStIM: High Dimensional Stimulation Immune Mapping
assay cytof cytometry cytometry-analysis-pipeline flowcytometry r-package stimulation
Last synced: 05 Oct 2025
https://github.com/lance-waller-lab/gater
Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
cran cran-r cytometry flow-cytometry gating kernel-density-estimation mass-cytometry non-euclidean-spaces r r-package rstats rstats-package spatial-analysis
Last synced: 22 Oct 2025
https://github.com/klavinslab/cowfish
Cowfish: an Aquarium cytometry results analyzing package in Python
aquarium-cytometry cytometry pandas python
Last synced: 07 Apr 2026
https://github.com/wwu-mmll/gatenet
Official implementation of GateNet
cytof cytometry flow-cytometry gating mass-cytometry single-cell
Last synced: 16 Jan 2026
https://github.com/dillonhammill/cytoexplorer-map
Comparison of Dimensionality Reduction Techniques in CytoExploreR
cytometry dimensionality-reduction
Last synced: 15 Mar 2026
https://github.com/bodenmillergroup/bbsnippets
This repository contains general examples, code snippets and guidelines.
Last synced: 19 Mar 2026
