https://github.com/flatironinstitute/CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

2-photon calcium-imaging cnmf deconvolution motion-correction source-extraction

Last synced: 06 May 2025

https://github.com/flatironinstitute/caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

2-photon calcium-imaging cnmf deconvolution motion-correction source-extraction

Last synced: 14 May 2025

https://github.com/weisongzhao/sparse-sim

Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3

deconvolution fluorescence-microscopy-imaging image-processing image-restoration matlab-gui microscopy super-resolution

Last synced: 13 Apr 2025

https://github.com/roflmaostc/deconvoptim.jl

A multi-dimensional, high performance deconvolution framework written in Julia Lang for CPUs and GPUs.

deconvolution gpu image-processing julia microscopy

Last synced: 07 Mar 2026

https://github.com/unfoldtoolbox/unfold.jl

Neuroimaging (EEG, fMRI, pupil ...) regression analysis in Julia

deconvolution eeg erp event-related-potentials julia mass-univariate-modeling mixed-models modeling overlap regression splines

Last synced: 16 Jan 2026

https://github.com/unfoldtoolbox/unfold

A matlab EEG toolbox to perform overlap correction and non-linear & linear regression.

deconvolution eeg event-related-potentials eye-tracking linear-regression mass-univariate overlap rerp splines

Last synced: 08 Sep 2025

https://github.com/danko-lab/ted

a fully Bayesian approach to deconvolve tumor microenvironment

bulk-rna-seq deconvolution expression-profile scrna-seq stromal-cells tumor-cells tumor-expression

Last synced: 16 Aug 2025

https://github.com/nathanskene/ewce

Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.

deconvolution single-cell single-cell-rna-seq transcriptomics

Last synced: 13 Apr 2025

https://github.com/biomedical-imaging-group/deconvolutionlab2

Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

3d algorithms deconvolution images-plugins microscopy

Last synced: 06 Apr 2025

https://github.com/unfoldtoolbox/Unfold.jl

Neuroimaging (EEG, fMRI, pupil ...) regression analysis in Julia

deconvolution eeg erp event-related-potentials julia mass-univariate-modeling mixed-models modeling overlap regression splines

Last synced: 01 May 2025

https://github.com/VladKarpushin/out_of_focus_deblur

You will learn how to recover an out-of-focus image by Wiener filter

deconvolution opencv wiener

Last synced: 27 Mar 2025

https://github.com/ajitjohnson/imsig

Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours

cancer deconvolution immune transcriptomics

Last synced: 18 Feb 2026

https://github.com/jrbourbeau/pyunfold

Iterative unfolding for Python

data-analysis deconvolution inverse-problems python regularization statistics unfolding

Last synced: 01 May 2025

https://github.com/wwxkenmo/enigma

A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)

bulk-rna-seq-deconvolution cell-type-deconvolution cell-type-gene-expression-analysis deconvolution matrix-completion single-cell spatial-transcriptomics

Last synced: 17 Feb 2026

https://github.com/lts5/us-non-stationary-deconv

A Physical Model of Non-stationary Blur in Ultrasound Imaging

deconvolution inverse-problems ultrasound-imaging

Last synced: 18 Jan 2026

https://github.com/hyeonsangjeon/disparity-based-space-vagriant-image-deblurring

“Disparitybased space-variant image deblurring,” Signal Processing: Image Communication, vol. 28, no. 7, pp. 792–808, 2013.

autocorrelation blurred-images convolution deblurring deblurring-algorithm deconvolution disparity graph-cut image-deblurring image-processing image-reconstruction image-restoration image-segmentation kurtosis maximum-a-posteriori-estimation optimization point-spread-function psf-estimation regularization space-variant

Last synced: 06 Feb 2026

https://github.com/jolideco/jolideco

A Python package for Poisson joint likelihood deconvolution

deconvolution gamma-ray-astronomy image-analysis maximum-a-posteriori-estimation pytorch x-ray-astronomy

Last synced: 11 Mar 2026

https://github.com/weisongzhao/sacd

Source code of SACD(Super-resolution with Auto-Correlation two-step Deconvolution)

autocorrelation deconvolution fluctuations image-processing microscopy smlm-data sofi super-resolution

Last synced: 01 Jul 2025

https://github.com/ferreols/tipi4icy

tipi4icy is a collection of Icy plugins based on TiPi

blind-deconvolution deconvolution deconvolution-microscopy icy-plugins microscopy

Last synced: 11 Mar 2026

https://github.com/mdtanker/ris_basement_sediment

Ross Ice Shelf basement depths and sediment thickness

airborne antarctica antostrat basement deconvolution geophysics gmt jupyter-notebook magnetics pygmt rosetta rossiceshelf werner

Last synced: 15 Apr 2025

https://github.com/alex-lechner/pytorch-gan

Creating artificial images with a Generative Adversarial Network written in PyTorch.

convolutional-neural-networks deconvolution deep-learning deep-neural-networks discriminator generative-adversarial-network generative-art generative-model generator image-processing neural-network

Last synced: 17 Sep 2025

https://github.com/dpscience/dltreconvolution

DLTReconvolution - A Python based software for the analysis of lifetime spectra using the iterative least-square reconvolution method

analysis convolution decay-spectrum decomposition deconvolution exponential-distributions fls fluorescence fourier-transform ill-posed inverse-problems least-square-regression least-squares lifetime-spectra lifetime-spectroscopy multi-exponential pals positron-lifetime-spectra python reconvolution

Last synced: 27 Feb 2026

https://github.com/liuy12/scdeconr

Deconvolution of bulk RNA-seq data using single-cell RNA-seq data as reference

bulk-rna-seq-deconvolution deconvolution differential-expression ffpe geneset-enrichment-analysis r scdeconr single-cell

Last synced: 22 Oct 2025

https://github.com/yymao/abundancematching

A Python package for subhalo abundance matching (SHAM) with scatter.

abundance-matching astrophysics deconvolution python subhalo-abundance-matching

Last synced: 15 Apr 2025

https://github.com/lieberinstitute/deconvobuddies

Helper Functions for LIBD Deconvolution

bioconductor deconvolution rstats

Last synced: 11 Dec 2025

https://github.com/diegommcc/spatialddls

Deconvolution of spatial transcriptomics data based on Deep Learning

deconvolution deep-learning neural-network spatial-transcriptomics

Last synced: 22 Oct 2025

https://github.com/lieberinstitute/treg

Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data

bioconductor deconvolution rnascope rstats scrna-seq smfish snrna-seq treg

Last synced: 07 May 2025

https://github.com/cg1507/convnet-vis

ConvNet-Vis helps to visualize the Deep Convolutional Neural Networks with following methods.

convnet-zoo convolutional-neural-networks deconvolution deep-dream keras tensorboard tensorflow visualization-tools

Last synced: 15 Jul 2025

https://github.com/cafferychen777/flashdeconv

Fast Linear Algebra for Scalable Hybrid Deconvolution of Spatial Transcriptomics

bioinformatics cell-type-deconvolution computational-biology deconvolution python scanpy single-cell spatial-transcriptomics visium

Last synced: 13 Jan 2026

https://github.com/imcf/hrm-omero

The HRM-OMERO connector

deconvolution hrm huygens huygens-remote-manager omero omero-import omero-py pdoc poetry python python-black

Last synced: 26 Apr 2025

https://github.com/kalidouba/dicepro

Semi-Supervise cellular deconvolution of Bulk RnaSeq using NMF and CiberSortx, DCQ or others

abundance-estimation cibersortx dcq deconvolution iterative-methods machine-learning neural-network nmf-matrix-factorization r rna-seq-analysis

Last synced: 04 Mar 2026

https://github.com/fmi-faim/faim-huygens

Tools to interact with SVI Huygens from Python

deconvolution huygens

Last synced: 14 Jan 2026

https://github.com/agarnung/image-deblurring-exploration

An attempt to make my mobile phone's camera work

deblurring deconvolution image-processing investigation

Last synced: 16 Feb 2026

https://github.com/eonurk/seamless

A single cell transcriptomics based deconvolution pipeline for Leukemia

aml deconvolution venetoclax

Last synced: 22 Oct 2025

https://xwanglabthu.github.io/ARIC/

Accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data

deconvolution methylation rna-seq

Last synced: 20 Apr 2025

https://github.com/jackie-chou/pyopencl_deconvolution

a simple deconvolution implemented with pyopencl

deconvolution opencl

Last synced: 11 Nov 2025

https://github.com/lieberinstitute/deconvo_lute-paper

Contains analysis for the lute software paper

bioconductor deconvolution neuroscience r transcriptomics

Last synced: 16 Jul 2025

https://github.com/eurunuela/phd

A website version of my PhD dissertation.

deconvolution fmri fmri-data-analysis

Last synced: 17 Jan 2026

https://github.com/bwmeyers/tauclean

Python implementation of pulse profile scattering deconvolution

deconvolution pulsars signal-analysis

Last synced: 18 Jan 2026

https://github.com/fzimmermann89/bsc

Bachelor Thesis

bachelor-project bachelor-thesis deconvolution matlab mie multislice phaseretrieval physics physics-simulation scattering xray xray-scattering-experiments

Last synced: 14 Jun 2025

https://github.com/imcf/hrm_containerization

:crystal_ball::microscope: Installation scripts for setting up the HRM in containers. :truck: :construction: :whale:

containers deconvolution installation lxc-containers

Last synced: 26 Feb 2025

https://github.com/broadinstitute/temporal-rna-seq-deconvolution

Package for temporal deconvolution of bulk RNA-seq samples using SVI

deconvolution pyro rna-seq single-cell-rna-seq svi transcriptomics

Last synced: 17 Mar 2026

https://github.com/lawrencecollins/bafpipe

Automated deconvolution of Bruker mass spectra datasets using UniDec

bruker deconvolution mass-spectrometry protein unidec

Last synced: 04 Mar 2026

https://github.com/pmb59/dosymetric-image-reconstruction

Reconstructing dosimetric images using a deconvoluted physical model

deconvolution dosimetry image-processing matlab radiation

Last synced: 13 Feb 2026

https://github.com/somjit101/dcgan-gradient-tape

A study of the use of the Tensorflow GradientTape class for differentiation and custom gradient generation along with its use to implement a Deep-Convolutional Generative Adversarial Network (GAN) to generate images of hand-written digits.

batch-normalization convolutional-layers dcgan-tensorflow deconvolution dropout-layers gan generative-adversarial-network gradient-tape keras-tensorflow mnist-dataset neural-network tensorflow transpose-convolution

Last synced: 06 Mar 2025

https://github.com/dmytruek/deconvolution-rs

deconvolution rust science

Last synced: 02 Apr 2025