https://github.com/tidyomics/tidybulk

Brings bulk and pseudobulk transcriptomics to the tidyverse

bioconductor bulk-transcriptional-analyses deseq2 differential-expression edger ensembl-ids entrez gene-symbols gsea mds-dimensions pca pipe redundancy tibble tidy tidy-data tidyverse transcriptomics transcripts tsne

Last synced: 21 Feb 2026

https://github.com/charles-plessy/tutorial

Various tutorials on how to analyse transcriptomic data.

cage edger fantom transcriptome tutorial

Last synced: 16 Aug 2025

https://github.com/hernanmd/edger.enhancedvolcanoplot

Enhanced volcano plot using edgeR data

bioinformatics edger r rna-seq rnaseq volcano

Last synced: 24 Jun 2026

https://github.com/pwilmart/sea_lion_urine_spc

Sea lion urine comparison with spectral counting.

edger jupyter-notebook paw-pipeline proteomics r spectral-counting spectral-counts

Last synced: 15 May 2026

https://github.com/markonyango/quasi-express

bioinformatics deseq2 differential-expression edger gui-application rna-seq rna-seq-pipeline

Last synced: 24 Mar 2025

https://github.com/zxcurs3d/bulk-rnaseq-visualization-workflow-zrn01-rm

bioinformatics-pipeline deseq2-analysis differential-gene-expression edger ngs ngs-analysis omics omics-analysis quality-control r rna-seq-analysis rnaseq-pipeline rnaseq-workshop rstudio visualizations

Last synced: 04 Oct 2025

https://github.com/pwilmart/smith_spc_2018

A large-scale spectral counting data analysis using PAW pipeline, edgeR, R, and Jupyter notebooks

edger jupyter-notebooks paw-pipeline proteomics r spectral-counting statistical-analysis

Last synced: 19 Apr 2026