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Projects in Awesome Lists tagged with epigenetics

A curated list of projects in awesome lists tagged with epigenetics .

https://github.com/jts/nanopolish

Signal-level algorithms for MinION data

bioinformatics c-plus-plus epigenetics genome-assembly methylation science

Last synced: 13 Nov 2024

https://github.com/nanoporetech/megalodon

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

basecalling epigenetics guppy variant-calling

Last synced: 13 Nov 2024

https://github.com/cangermueller/deepcpg

Deep neural networks for predicting CpG methylation

deep-neural-networks deeplearning epigenetics methylation single-cell

Last synced: 06 Nov 2024

https://github.com/bioinfomaticsCSU/deepsignal

Detecting methylation using signal-level features from Nanopore sequencing reads

bioinformatics epigenetics methylation nanopore-sequencing tensorflow

Last synced: 13 Nov 2024

https://github.com/caleblareau/bap

Bead-based single-cell atac processing

bead-doublets epigenetics epigenomics genomics scatac single-cell

Last synced: 16 Nov 2024

https://github.com/supermaxiste/arpeggio

A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.

allopolyploid automation bisulfite-sequencing dna-methylation epigenetics plants reproducibility snakemake whole-genome-sequencing workflow

Last synced: 27 Oct 2024

https://github.com/deib-geco/combsafe

Combinatorial and Semantic Analysis of Functional Elements

big-data-analysis chromatin-state epigenetics semantic-annotation

Last synced: 24 Nov 2024

https://github.com/rushiljalal/quitwise

An android app made using React Native for Appathon 2024

epigenetics expo react-native typescript

Last synced: 28 Nov 2024

https://github.com/y9c/m6a-camseq

🧪 m6A-CAMseq

bioinformatics epigenetics rna

Last synced: 13 Nov 2024

https://github.com/lcwong0928/hotspot-prediction

A machine learning tool that uses DNA sequence and epigenetic data to enhance recombination hotspot predictions.

epigenetics machine-learning recombination-hotspot-prediction

Last synced: 05 Dec 2024

https://github.com/fhdsl/anvil_book_epigenetics_intro

An introductory activity for epigenetics, or the idea of "nature versus nurture" in genetics. Learners use the UCSC Genome Browser.

anvil course epigenetics human-genomes module ucsc-browser

Last synced: 15 Nov 2024