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An open API service indexing awesome lists of open source software.
Projects in Awesome Lists tagged with epigenomics
A curated list of projects in awesome lists tagged with epigenomics .
https://github.com/Novartis/peax
Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders
autoencoder data-visualization deep-learning epigenomics interactive-machine-learning pattern-search sequential-data
Last synced: 14 Nov 2024
https://github.com/dohlee/chromoformer
The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
artificial-intelligence bioinformatics deep-learning epigenomics gene-expression genomics histone-modifications transcriptomics transformer
Last synced: 11 Nov 2024
https://github.com/caleblareau/bap
Bead-based single-cell atac processing
bead-doublets epigenetics epigenomics genomics scatac single-cell
Last synced: 03 Aug 2024
https://github.com/dohlee/metheor
:comet: Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments
bioinformatics computational-biology computational-epigenomics dna-methylation epigenomics rust
Last synced: 11 Nov 2024
https://github.com/rnajena/magnipore
Magnipore: Differential single nucleotide changes of ONT signals
comparative-analysis epigenomics epitranscriptomics ont oxford-nanopore raw-signal
Last synced: 08 Aug 2024
https://github.com/crazyhottommy/pyflow-chromforest
snakemake workflow for random forest based feature selection on chromHMM data
chromhmm epigenomics machine-learning snakemake-workflows
Last synced: 13 Nov 2024
