https://github.com/mancusolab/sushie

Software to perform multi-ancestry SNP fine-mapping on molecular data

bayesian-inference eqtl fine-mapping genetics gwas jax pqtl python susie variational-inference

Last synced: 07 Mar 2026

https://github.com/limix/cellregmap

CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq

cellregmap eqtl limix sc-eqtl scrna-seq structlmm

Last synced: 11 Jun 2025

https://github.com/mikelove/mrlocus

Older repo for MRLocus. See new website for software usage guide:

eqtl gwas gwas-summary-statistics mendelian-randomization

Last synced: 10 Apr 2025

https://github.com/szcf-weiya/mtwas

R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"

eqtl multi-tissue twas

Last synced: 14 Sep 2025

https://github.com/ropensci/gtexr

An R interface to the GTEx Portal API

api-wrapper bioinformatics eqtl gtex r sqtl

Last synced: 04 Mar 2026

https://github.com/soedinglab/tejaas

Tejaas - a tool for discovering trans-eQTLs

eqtl eqtl-mapping gene-expression gtex reverse-regression trans-eqtl

Last synced: 27 Apr 2025

https://github.com/senresearch/liteqtl.jl

A lightweight Julia package for eQTL genome scans near real-time.

eqtl genome-scan gpu-computing julia linearmodel

Last synced: 26 Jul 2025

https://github.com/snesic/manhattan-plot-eqtls-per-gene

eqtl genomics-visualization

Last synced: 16 Oct 2025

https://github.com/greenelab/cimr-d

client to the cimr-d database for continuous integration and analysis using cimr

continuous-integration database eqtl gtex gwas twas

Last synced: 16 Apr 2026