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Awesome

An open API service indexing awesome lists of open source software.

Projects in Awesome Lists tagged with evolution

A curated list of projects in awesome lists tagged with evolution .

https://github.com/dspinellis/unix-history-repo

Continuous Unix commit history from 1970 until today

bell-labs berkeley evolution freebsd history snapshot unix

Last synced: 14 May 2025

https://github.com/revolutionary-games/thrive

The main repository for the development of the evolution game Thrive.

biology csharp evolution game godot godot-engine sandbox science simulation strategy thrive

Last synced: 13 May 2025

https://github.com/Revolutionary-Games/Thrive

The main repository for the development of the evolution game Thrive.

biology csharp evolution game godot godot-engine sandbox science simulation strategy thrive

Last synced: 01 Apr 2025

https://github.com/victorqribeiro/invaderz

Space invaders, but the invaders evolve with genetic algorithm

evolution evolutionary-algorithm game genetic-algorithm javascript space-invaders

Last synced: 04 Apr 2025

https://github.com/dspinellis/unix-history-make

Code and data to create a git repository representing the Unix source code history

bell-labs evolution history unix

Last synced: 07 Apr 2025

https://github.com/aim42/aim42

public repository for the "architecture improvement method reference"

architecture evolution improvement maintenance method remedies

Last synced: 12 Apr 2025

https://github.com/MichaelJWelsh/bot-evolution

An interesting display of evolution through neural networks and a genetic algorithm

evolution genetic-algorithm neural-network python visual

Last synced: 19 Jul 2025

https://github.com/michaeljwelsh/bot-evolution

An interesting display of evolution through neural networks and a genetic algorithm

evolution genetic-algorithm neural-network python visual

Last synced: 03 May 2025

https://github.com/pioreactor/pioreactor

Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.

algae bacteria biology bioreactor biotech educators evolution fermentation hardware mqtt raspberry-pi raspberrypi science yeast

Last synced: 13 Apr 2025

https://github.com/lucidrains/evolutionary-policy-optimization

Pytorch implementation of Evolutionary Policy Optimization, from Wang et al. of the Robotics Institute at Carnegie Mellon University

artificial-intelligence deep-learning evolution genetic-algorithms reinforcement-learning robotics

Last synced: 11 Sep 2025

https://github.com/dessimozlab/fastoma

FastOMA is a scalable software package to infer orthology relationship.

bioinformatics comparative-genomics evolution orthology

Last synced: 16 Jan 2026

https://github.com/jangevaare/pathogen.jl

Simulation, visualization, and inference of individual level infectious disease models with Julia

epidemics evolution infectious-diseases julia mcmc transmission-network

Last synced: 04 Jul 2025

https://github.com/jamiemcg/busco_phylogenomics

BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins

bayesian bioinformatics evolution genomics maximum-likelihood phylogenetics phylogenomics

Last synced: 10 Apr 2025

https://github.com/JLSteenwyk/ClipKIT

a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference

bioinformatics evolution evolutionary-biology genomics phylogenetics phylogenomics python systematics

Last synced: 12 May 2025

https://github.com/jlsteenwyk/clipkit

a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference

bioinformatics evolution evolutionary-biology genomics phylogenetics phylogenomics python systematics

Last synced: 19 Sep 2025

https://github.com/jlsteenwyk/phykit

a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies

bioinformatics evolution evolutionary-biology genomics multiple-sequence-alignments phylogenetics phylogenomics python

Last synced: 22 Mar 2025

https://github.com/tanghaibao/quota-alignment

Guided synteny alignment between duplicated genomes (within specified quota constraint)

comparative-genomics evolution genomics synteny

Last synced: 21 Mar 2025

https://github.com/lkremer/cafe_fig

A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)

cafe ete3 evolution gene-families molecular-evolution phylogenetic-trees

Last synced: 09 May 2025

https://github.com/traitecoevo/plant

Trait-Driven Models of Ecology and Evolution :evergreen_tree:

c-plus-plus demography dynamic ecology evolution forests plant-physiology r science-research simulation trait

Last synced: 07 May 2025

https://github.com/petercollingridge/cell-simulation

Python simulation of a single-celled organism

biology evolution python python27

Last synced: 09 Apr 2025

https://github.com/hajkd/ltrpred

De novo annotation of young retrotransposons

diversification evolution genome ltr ltr-retrotransposons ltr-transposons pipeline

Last synced: 02 Apr 2025

https://github.com/drostlab/ltrpred

De novo annotation of young retrotransposons

diversification evolution genome ltr ltr-retrotransposons ltr-transposons pipeline

Last synced: 30 Oct 2025

https://github.com/nathanssantos/evolution-graph

Highly customizable, animated, responsive and dependency-free Evolution Graph implementation. The package is built with Vanilla JavaScript and is used to create flexible data visualizations and present evolution relationships between entities.

animated chart css customizable dependency-free evolution evolution-chart evolution-graph graph javascript js react responsive vanilla vanilla-javascript vanilla-js

Last synced: 30 Dec 2025

https://github.com/bones-ai/rust-ecosystem-simulation

A simple ecosystem simulation written in Rust and Bevy

bevy-engine ecosystem evolution natural-selection rust-lang

Last synced: 12 Apr 2025

https://github.com/harmslab/epistasis

A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

epistasis evolution genetics genotype-phenotype-maps high-order modeling nonlinear python

Last synced: 14 Jan 2026

https://github.com/niemasd/FAVITES

FAVITES (FrAmework for VIral Transmission and Evolution Simulation)

docker evolution evolution-simulator hiv modular phylogenetics robust simulation transmission transmission-network virus

Last synced: 23 Mar 2025

https://github.com/smartdevicelink/sdl_evolution

Tracking and proposing changes to SDL's public APIs.

evolution proposal sdl sdl-evolution smartdevicelink

Last synced: 29 Jul 2025

https://github.com/mmore500/dishtiny

DISHTINY: A Platform for Studying Open-Ended Evolutionary Transitions in Individuality

artificial-life emergence evolution evolutionary-computation evolutionary-transitions open-ended-evolution scientific-computing

Last synced: 30 Apr 2025

https://github.com/igorkamyshev/trona

Write DB migrations with SQL and run them with a CLI

database evolution migration node

Last synced: 11 Sep 2025

https://github.com/m1rza-s/Cellsim-2

Simulating complete lives of different cellular animals and plants. Evolution, inheritance, predation and more.

2d-graphics animal-behavior breeds cellsim cellular-automata cellular-automatons cellularautomata emergent-behavior evolution java javafx mutations simulation zero-player-game

Last synced: 16 May 2025

https://github.com/nathsou/darwin

Flexible genetic algorithm implementation in TypeScript.

algorithms darwin evolution genetic genetic-algorithm typescript

Last synced: 21 Mar 2025

https://github.com/lavabit/tutorials

Configuration tutorials for a variety of mail user agents.

email-client evolution geary gmail k9mail kmail mailbird mailpile mutt sylpheed thebat thunderbird tutorial windows-mail

Last synced: 20 Feb 2025

https://github.com/ncbi/tree-tool

Incremental building of phylogenetic distance trees

bioinformatics bioinformatics-tool data-analysis distance-measures evolution phylogenetic-trees

Last synced: 04 Jul 2025

https://github.com/jlsteenwyk/orthosnap

a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

bioinformatics evolution evolutionary-biology genomics orthology orthology-assignments orthology-inference phylogenetics phylogenomics python

Last synced: 19 Apr 2025

https://github.com/jlsteenwyk/biokit

a versatile toolkit for processing and analyzing diverse types of sequence data

bioinformatics comparative-genomics evolution evolutionary-biology evolutionary-genomics genomics python

Last synced: 26 Jul 2025

https://github.com/briandconnelly/seeds

Stochastic Cellular Artificial Life Simulator

artificial-life cellular-automata evolution python simulation-framework

Last synced: 29 Oct 2025

https://github.com/ashleve/AI-creatures

Evolving movement of 3d virtual creatures using Unity and machine learning

ai animation creatures evolution neural-network unity

Last synced: 25 Apr 2025

https://github.com/moshi4/cafeplotter

A tool for plotting CAFE5 gene family expansion/contraction result

bioinformatics evolution matplotlib molecular-evolution phylogenetic-trees phylogenetics phylogenomics python

Last synced: 21 Apr 2025

https://github.com/JakobStenseke/EvolutionSimulation01

Evolutionary simulation where agents age, reproduce, and eat each other

evolution evolution-simulation evolutionary-biology predator-prey unity

Last synced: 25 Apr 2025

https://github.com/rvosa/bio-phylo

Bio::Phylo - Phyloinformatic analysis using Perl

bioinformatics computational-biology evolution perl phylogenetics toolkit

Last synced: 04 Sep 2025

https://github.com/deontologician/evofighters

Genetic evolution of little fighting AI's

evolution rpg-game rust simulations

Last synced: 02 Jul 2025

https://github.com/zsailer/pyasr

Ancestral Sequence Reconstruction in Python

evolution pandas phylogenetics python

Last synced: 13 Sep 2025

https://github.com/benmarwick/signatselect

signatselect: Identifying signatures of selection

archaeological-science archaeology evolution

Last synced: 14 Apr 2025

https://github.com/kiwi0fruit/ultimate-question

Open-ended natural selection of interacting code-data-dual algorithms as a property analogous to Turing completeness.

artificial-life ethics evolution meta-ethics metaethics natural-selection open-ended-evolution open-endedness theory-of-computation theory-of-everything turing-completeness universal-darwinism

Last synced: 16 Oct 2025

https://github.com/albin-johansson/ecosystem

A 3D simulation of natural processes within a small ecosystem, such as evolution and natural selection.

bachelor-project bachelor-thesis chalmers ecosystem evolution natural-selection simulation unity unity3d

Last synced: 26 Mar 2025

https://github.com/engineeringsoftware/codeditor

Multilingual Code Co-Evolution Using Large Language Models

co-evolution code evolution large-language-models llm

Last synced: 12 May 2025

https://github.com/dombennett/treeman

:deciduous_tree::man: An R package for manipulating phylogentic trees

bioinformatics cran evolution phylogenetic-trees

Last synced: 21 Sep 2025

https://github.com/emilydolson/phylotrackpy

Python phylogeny tracker for in silico evolution experiments

artificial-life digital-evolution evolution evolutionary-computation phylogeny

Last synced: 04 Mar 2025

https://github.com/shawntz/sashimi

High-throughput organismal image segmentation using deep learning (Schwartz & Alfaro, 2021)

convolutional-neural-networks deep-learning evolution fish methods python segmentation

Last synced: 29 Oct 2025

https://github.com/andyglow/caseclass-evolution

Scala Case Class Extendable

case-class evolution extend scala

Last synced: 22 Apr 2025

https://github.com/nishkarshraj/evolvve-student-chapter-app

Evolution is the process which makes someone/something ordinary to extra ordinary. Here is a project done by UPES Students from B.Tech DevOps which is generic model on Student Chapters that helps us in extra-curricular activities.

automation collaboration cxoracle data-structures database database-management evolution git github normalization open-source opensource project python python3 student-chapters tech-devops upes-students

Last synced: 22 Apr 2025

https://github.com/vbertone/apfelxx

A PDF evolution library in C++

apfel arxiv dis evolution homebrew-hep pdf-evolution-library

Last synced: 26 Apr 2025

https://github.com/hhandika/nahpu

A cross-platform (mobile and desktop) digital catalog app for natural history collections

biology cross-platform evolution field-expedition flutter mobile-app

Last synced: 23 Apr 2025

https://github.com/evochora/evochora

Evochora: Simulation for foundational artificial life research

alife artificial-life digital-life evolution java open-ended-evolution simulation

Last synced: 19 Jan 2026

https://github.com/pakillo/journals-software-ecology

A directory of journals publishing software papers related to ecology, evolution & environment

ecology evolution software

Last synced: 28 Mar 2025

https://github.com/asctime/ev2w

Gnome Evolution email client for Windows (MinGW64 x64)

caldav email evolution gnome gtk2 imap imap-client ldap webcal windows-10 windows-desktop x64

Last synced: 13 May 2025

https://github.com/giffordlabcvr/DIGS-tool

Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.

blast-searches comparative-genomics data-mining evolution genome-annotation molecular-genetics paleovirology sequence-similarity similarity-search transposable-elements

Last synced: 23 Mar 2025

https://github.com/biojulia/phylogenies.jl

The BioJulia package for working with phylogenetic trees and geneologies.

bioinformatics biology evolution phylogenetic-trees phylogenetics phylogenomics

Last synced: 29 Jun 2025

https://github.com/ernestbuffington/dev-php-nuke-evolution-xtreme

This is the US hardened version of PHP-Nuke Evolution Xtreme and is secure and safe. Built on PHP Version 7.4.30 - Forums - Blogs - Projects - Advanced Site Map - Web Links - Groups - Advanced Theme Support - Downloads - Advertising - Network Advertising - Link Back System - FAQ - Bookmark Vault - Private Virtual Cemetery - Loan Amortization - Image Hosting

advanced cms cms-framework evolution forum forum-site forum-software forums forumsoftware nuke-evoltion nuke-evolution-xtreme nuke-sentinel php php-nuke php-nuke-evolution php7 php8 phpnuke xtreme

Last synced: 16 Aug 2025

https://github.com/rdiaz02/what_genotype_next

Code for "Conditional prediction of consecutive tumor evolution using cancer progression models: What genotype comes next?", J.Diaz-Colunga, R.Diaz-Uriarte: https://doi.org/10.1371/journal.pcbi.1009055

cancer-evolution cbn evolution genotype-transitionmatrix mhn plots prediction r rdata simulation transition-matrices

Last synced: 27 Dec 2025

https://github.com/faridrashidi/scphylo-tools

a python toolkit for single-cell tumor phylogenetic analysis

algorithms bioinformatics cancer computational-biology evolution phylogenetics single-cell

Last synced: 24 Dec 2025

https://github.com/wangl-cc/evolutionarymodelingtools.jl

Simulate evolutionary biology models with Gillespie algorithm.

ecology evolution evolutionary-dynamics gillespie-algorithm julia simulation

Last synced: 15 May 2025

https://github.com/danilofuchs/hltv-top20-evolution

Player ranking evolution on HLTV Top 20, since 2013

counter-strike csgo evolution hltv ranking react

Last synced: 25 Oct 2025

https://github.com/joonasvali/mirrors

Mirrors is a simulation of an arbitrary physical system, where the goal is achieved using artificial evolution.

artificial-evolution evolution genetic-algorithm graphical-user-interface simulation watchmaker

Last synced: 19 Aug 2025

https://github.com/wang-q/nwr

`nwr` is a command line tool for working with NCBI taxonomy, Newick files and assembly reports

assembly bioinformatics evolution ncbi newick-format phylogenetic-trees rust

Last synced: 10 Jun 2025

https://github.com/fgforrest/darwin

Darwin is a small Java library that helps applications to setup and evolve their database schema over the time. Evolution is based on SQL patch application and aims at traceability, predictability and reliability. It has been for 13 years in production systems.

autoupdate database database-schema evolution java model sql

Last synced: 10 Jul 2025

https://github.com/chrxh/alien-docs

Documentation for ALIEN

cuda evolution physics-simulation simulation

Last synced: 24 Jun 2025

https://github.com/rish-16/hringhorni

A Python library for Cellular Automaton simulations

cellular-automata conways-game-of-life evolution

Last synced: 04 Nov 2025

https://github.com/harmslab/gpseer

A tool to predict missing data in sparsely sampled genotype-phenotype maps

epistasis evolution genotype-phenotype-map prediction python statistics

Last synced: 14 Jan 2026

https://github.com/pasaopasen/opp-op-pop-init

PyPI package containing opposition learning operators and population initializers for evolutionary algorithms

evolution evolutionary-algorithms genetic-algorithms obl operators opposition-based-learning population-genetics pypi-package

Last synced: 14 Apr 2025