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Awesome

An open API service indexing awesome lists of open source software.

Projects in Awesome Lists tagged with evolution

A curated list of projects in awesome lists tagged with evolution .

https://github.com/dspinellis/unix-history-repo

Continuous Unix commit history from 1970 until today

bell-labs berkeley evolution freebsd history snapshot unix

Last synced: 14 May 2025

https://github.com/revolutionary-games/thrive

The main repository for the development of the evolution game Thrive.

biology csharp evolution game godot godot-engine sandbox science simulation strategy thrive

Last synced: 13 May 2025

https://github.com/Revolutionary-Games/Thrive

The main repository for the development of the evolution game Thrive.

biology csharp evolution game godot godot-engine sandbox science simulation strategy thrive

Last synced: 01 Apr 2025

https://github.com/victorqribeiro/invaderz

Space invaders, but the invaders evolve with genetic algorithm

evolution evolutionary-algorithm game genetic-algorithm javascript space-invaders

Last synced: 04 Apr 2025

https://github.com/dspinellis/unix-history-make

Code and data to create a git repository representing the Unix source code history

bell-labs evolution history unix

Last synced: 07 Apr 2025

https://github.com/aim42/aim42

public repository for the "architecture improvement method reference"

architecture evolution improvement maintenance method remedies

Last synced: 12 Apr 2025

https://github.com/stephaneguindon/phyml

PhyML -- Phylogenetic estimation using (Maximum) Likelihood

evolution mcmc phylogenetics

Last synced: 12 Mar 2026

https://github.com/MichaelJWelsh/bot-evolution

An interesting display of evolution through neural networks and a genetic algorithm

evolution genetic-algorithm neural-network python visual

Last synced: 19 Jul 2025

https://github.com/michaeljwelsh/bot-evolution

An interesting display of evolution through neural networks and a genetic algorithm

evolution genetic-algorithm neural-network python visual

Last synced: 03 May 2025

https://github.com/pioreactor/pioreactor

Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.

algae bacteria biology bioreactor biotech educators evolution fermentation hardware mqtt raspberry-pi raspberrypi science yeast

Last synced: 23 Feb 2026

https://github.com/lucidrains/evolutionary-policy-optimization

Pytorch implementation of Evolutionary Policy Optimization, from Wang et al. of the Robotics Institute at Carnegie Mellon University

artificial-intelligence deep-learning evolution genetic-algorithms reinforcement-learning robotics

Last synced: 11 Sep 2025

https://github.com/dessimozlab/fastoma

FastOMA is a scalable software package to infer orthology relationship.

bioinformatics comparative-genomics evolution orthology

Last synced: 16 Jan 2026

https://github.com/jlsteenwyk/phykit

a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies

bioinformatics evolution evolutionary-biology genomics multiple-sequence-alignments phylogenetics phylogenomics python

Last synced: 05 Mar 2026

https://github.com/jangevaare/pathogen.jl

Simulation, visualization, and inference of individual level infectious disease models with Julia

epidemics evolution infectious-diseases julia mcmc transmission-network

Last synced: 04 Jul 2025

https://github.com/jamiemcg/busco_phylogenomics

BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins

bayesian bioinformatics evolution genomics maximum-likelihood phylogenetics phylogenomics

Last synced: 10 Apr 2025

https://github.com/jlsteenwyk/clipkit

a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference

bioinformatics evolution evolutionary-biology genomics phylogenetics phylogenomics python systematics

Last synced: 27 Feb 2026

https://github.com/JLSteenwyk/ClipKIT

a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference

bioinformatics evolution evolutionary-biology genomics phylogenetics phylogenomics python systematics

Last synced: 12 May 2025

https://github.com/tanghaibao/quota-alignment

Guided synteny alignment between duplicated genomes (within specified quota constraint)

comparative-genomics evolution genomics synteny

Last synced: 12 Mar 2026

https://github.com/lkremer/cafe_fig

A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)

cafe ete3 evolution gene-families molecular-evolution phylogenetic-trees

Last synced: 09 May 2025

https://github.com/traitecoevo/plant

Trait-Driven Models of Ecology and Evolution :evergreen_tree:

c-plus-plus demography dynamic ecology evolution forests plant-physiology r science-research simulation trait

Last synced: 26 Jan 2026

https://github.com/petercollingridge/cell-simulation

Python simulation of a single-celled organism

biology evolution python python27

Last synced: 09 Apr 2025

https://github.com/hajkd/ltrpred

De novo annotation of young retrotransposons

diversification evolution genome ltr ltr-retrotransposons ltr-transposons pipeline

Last synced: 02 Apr 2025

https://github.com/drostlab/ltrpred

De novo annotation of young retrotransposons

diversification evolution genome ltr ltr-retrotransposons ltr-transposons pipeline

Last synced: 30 Oct 2025

https://github.com/nathanssantos/evolution-graph

Highly customizable, animated, responsive and dependency-free Evolution Graph implementation. The package is built with Vanilla JavaScript and is used to create flexible data visualizations and present evolution relationships between entities.

animated chart css customizable dependency-free evolution evolution-chart evolution-graph graph javascript js react responsive vanilla vanilla-javascript vanilla-js

Last synced: 30 Dec 2025

https://github.com/bones-ai/rust-ecosystem-simulation

A simple ecosystem simulation written in Rust and Bevy

bevy-engine ecosystem evolution natural-selection rust-lang

Last synced: 12 Apr 2025

https://github.com/harmslab/epistasis

A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

epistasis evolution genetics genotype-phenotype-maps high-order modeling nonlinear python

Last synced: 14 Jan 2026

https://github.com/niemasd/FAVITES

FAVITES (FrAmework for VIral Transmission and Evolution Simulation)

docker evolution evolution-simulator hiv modular phylogenetics robust simulation transmission transmission-network virus

Last synced: 23 Mar 2025

https://github.com/smartdevicelink/sdl_evolution

Tracking and proposing changes to SDL's public APIs.

evolution proposal sdl sdl-evolution smartdevicelink

Last synced: 29 Jul 2025

https://github.com/igorkamyshev/trona

Write DB migrations with SQL and run them with a CLI

database evolution migration node

Last synced: 11 Sep 2025

https://github.com/mmore500/dishtiny

DISHTINY: A Platform for Studying Open-Ended Evolutionary Transitions in Individuality

artificial-life emergence evolution evolutionary-computation evolutionary-transitions open-ended-evolution scientific-computing

Last synced: 30 Apr 2025

https://github.com/m1rza-s/Cellsim-2

Simulating complete lives of different cellular animals and plants. Evolution, inheritance, predation and more.

2d-graphics animal-behavior breeds cellsim cellular-automata cellular-automatons cellularautomata emergent-behavior evolution java javafx mutations simulation zero-player-game

Last synced: 16 May 2025

https://github.com/nathsou/darwin

Flexible genetic algorithm implementation in TypeScript.

algorithms darwin evolution genetic genetic-algorithm typescript

Last synced: 21 Mar 2025

https://github.com/lavabit/tutorials

Configuration tutorials for a variety of mail user agents.

email-client evolution geary gmail k9mail kmail mailbird mailpile mutt sylpheed thebat thunderbird tutorial windows-mail

Last synced: 31 Jan 2026

https://github.com/ncbi/tree-tool

Incremental building of phylogenetic distance trees

bioinformatics bioinformatics-tool data-analysis distance-measures evolution phylogenetic-trees

Last synced: 31 Jan 2026

https://github.com/jlsteenwyk/orthosnap

a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

bioinformatics evolution evolutionary-biology genomics orthology orthology-assignments orthology-inference phylogenetics phylogenomics python

Last synced: 23 Feb 2026

https://github.com/statgenlmu/coala

A Framework for Coalescent Simulation in R

coalescent dna evolution popgen rstats simulation

Last synced: 21 Feb 2026

https://github.com/jlsteenwyk/biokit

a versatile toolkit for processing and analyzing diverse types of sequence data

bioinformatics comparative-genomics evolution evolutionary-biology evolutionary-genomics genomics python

Last synced: 13 Mar 2026

https://github.com/briandconnelly/seeds

Stochastic Cellular Artificial Life Simulator

artificial-life cellular-automata evolution python simulation-framework

Last synced: 29 Oct 2025

https://github.com/moshi4/cafeplotter

A tool for plotting CAFE5 gene family expansion/contraction result

bioinformatics evolution matplotlib molecular-evolution phylogenetic-trees phylogenetics phylogenomics python

Last synced: 21 Apr 2025

https://github.com/JakobStenseke/EvolutionSimulation01

Evolutionary simulation where agents age, reproduce, and eat each other

evolution evolution-simulation evolutionary-biology predator-prey unity

Last synced: 25 Apr 2025

https://github.com/ashleve/AI-creatures

Evolving movement of 3d virtual creatures using Unity and machine learning

ai animation creatures evolution neural-network unity

Last synced: 25 Apr 2025

https://github.com/rvosa/bio-phylo

Bio::Phylo - Phyloinformatic analysis using Perl

bioinformatics computational-biology evolution perl phylogenetics toolkit

Last synced: 04 Sep 2025

https://github.com/deontologician/evofighters

Genetic evolution of little fighting AI's

evolution rpg-game rust simulations

Last synced: 02 Jul 2025

https://github.com/zsailer/pyasr

Ancestral Sequence Reconstruction in Python

evolution pandas phylogenetics python

Last synced: 13 Sep 2025

https://github.com/benmarwick/signatselect

signatselect: Identifying signatures of selection

archaeological-science archaeology evolution

Last synced: 14 Apr 2025

https://github.com/kiwi0fruit/ultimate-question

Open-ended natural selection of interacting code-data-dual algorithms as a property analogous to Turing completeness.

artificial-life ethics evolution meta-ethics metaethics natural-selection open-ended-evolution open-endedness theory-of-computation theory-of-everything turing-completeness universal-darwinism

Last synced: 16 Oct 2025

https://github.com/harmslab/gpmap

A Python API for managing genotype-phenotype map data

evolution genetics genotype-phenotype-maps networkx

Last synced: 01 Feb 2026

https://github.com/engineeringsoftware/codeditor

Multilingual Code Co-Evolution Using Large Language Models

co-evolution code evolution large-language-models llm

Last synced: 12 May 2025

https://github.com/dombennett/treeman

:deciduous_tree::man: An R package for manipulating phylogentic trees

bioinformatics cran evolution phylogenetic-trees

Last synced: 28 Feb 2026

https://github.com/albin-johansson/ecosystem

A 3D simulation of natural processes within a small ecosystem, such as evolution and natural selection.

bachelor-project bachelor-thesis chalmers ecosystem evolution natural-selection simulation unity unity3d

Last synced: 26 Mar 2025

https://github.com/emilydolson/phylotrackpy

Python phylogeny tracker for in silico evolution experiments

artificial-life digital-evolution evolution evolutionary-computation phylogeny

Last synced: 04 Mar 2025

https://github.com/shawntz/sashimi

High-throughput organismal image segmentation using deep learning (Schwartz & Alfaro, 2021)

convolutional-neural-networks deep-learning evolution fish methods python segmentation

Last synced: 29 Oct 2025

https://github.com/evochora/evochora

Evochora: Simulation for foundational artificial life research

alife artificial-life digital-life evolution java open-ended-evolution simulation

Last synced: 02 Feb 2026

https://github.com/hhandika/nahpu

A cross-platform (mobile and desktop) digital catalog app for natural history collections

biology cross-platform evolution field-expedition flutter mobile-app

Last synced: 23 Apr 2025

https://github.com/vbertone/apfelxx

A PDF evolution library in C++

apfel arxiv dis evolution homebrew-hep pdf-evolution-library

Last synced: 26 Apr 2025

https://github.com/nishkarshraj/evolvve-student-chapter-app

Evolution is the process which makes someone/something ordinary to extra ordinary. Here is a project done by UPES Students from B.Tech DevOps which is generic model on Student Chapters that helps us in extra-curricular activities.

automation collaboration cxoracle data-structures database database-management evolution git github normalization open-source opensource project python python3 student-chapters tech-devops upes-students

Last synced: 22 Apr 2025

https://github.com/andyglow/caseclass-evolution

Scala Case Class Extendable

case-class evolution extend scala

Last synced: 22 Apr 2025

https://github.com/ernestbuffington/dev-php-nuke-evolution-xtreme

This is the US hardened version of PHP-Nuke Evolution Xtreme and is secure and safe. Built on PHP Version 7.4.30 - Forums - Blogs - Projects - Advanced Site Map - Web Links - Groups - Advanced Theme Support - Downloads - Advertising - Network Advertising - Link Back System - FAQ - Bookmark Vault - Private Virtual Cemetery - Loan Amortization - Image Hosting

advanced cms cms-framework evolution forum forum-site forum-software forums forumsoftware nuke-evoltion nuke-evolution-xtreme nuke-sentinel php php-nuke php-nuke-evolution php7 php8 phpnuke xtreme

Last synced: 16 Aug 2025

https://github.com/reiver/evolution-and-behavior-reading-list

A list of what was read and discussed, over the years, for the Evolution And Behavior reading group.

anthropology archaeology behavioral-sciences biology books evolution genetics neuroscience papers psychology psychometrics reading-list

Last synced: 08 Feb 2026

https://github.com/pakillo/journals-software-ecology

A directory of journals publishing software papers related to ecology, evolution & environment

ecology evolution software

Last synced: 28 Jan 2026

https://github.com/biojulia/phylogenies.jl

The BioJulia package for working with phylogenetic trees and geneologies.

bioinformatics biology evolution phylogenetic-trees phylogenetics phylogenomics

Last synced: 29 Jun 2025

https://github.com/mlandis/phyddle

Phylogenetic model exploration with deep learning

deep-learning epidemiology evolution phylogenetics statistical-models stochastic-processes

Last synced: 01 Feb 2026

https://github.com/giffordlabcvr/DIGS-tool

Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.

blast-searches comparative-genomics data-mining evolution genome-annotation molecular-genetics paleovirology sequence-similarity similarity-search transposable-elements

Last synced: 23 Mar 2025

https://github.com/asctime/ev2w

Gnome Evolution email client for Windows (MinGW64 x64)

caldav email evolution gnome gtk2 imap imap-client ldap webcal windows-10 windows-desktop x64

Last synced: 13 May 2025

https://github.com/joonasvali/mirrors

Mirrors is a simulation of an arbitrary physical system, where the goal is achieved using artificial evolution.

artificial-evolution evolution genetic-algorithm graphical-user-interface simulation watchmaker

Last synced: 19 Aug 2025

https://github.com/wang-q/nwr

`nwr` is a command line tool for working with NCBI taxonomy, Newick files and assembly reports

assembly bioinformatics evolution ncbi newick-format phylogenetic-trees rust

Last synced: 10 Jun 2025

https://github.com/faridrashidi/scphylo-tools

a python toolkit for single-cell tumor phylogenetic analysis

algorithms bioinformatics cancer computational-biology evolution phylogenetics single-cell

Last synced: 24 Dec 2025

https://github.com/rdiaz02/what_genotype_next

Code for "Conditional prediction of consecutive tumor evolution using cancer progression models: What genotype comes next?", J.Diaz-Colunga, R.Diaz-Uriarte: https://doi.org/10.1371/journal.pcbi.1009055

cancer-evolution cbn evolution genotype-transitionmatrix mhn plots prediction r rdata simulation transition-matrices

Last synced: 27 Dec 2025

https://github.com/danilofuchs/hltv-top20-evolution

Player ranking evolution on HLTV Top 20, since 2013

counter-strike csgo evolution hltv ranking react

Last synced: 25 Oct 2025

https://github.com/wangl-cc/evolutionarymodelingtools.jl

Simulate evolutionary biology models with Gillespie algorithm.

ecology evolution evolutionary-dynamics gillespie-algorithm julia simulation

Last synced: 15 May 2025

https://github.com/brpetrucci/paleobuddy

paleobuddy: an R package for simulating diversification dynamics, fossil records and phylogenies in R.

evolution macroevolution package paleobiology paleontology phylogenetics r

Last synced: 13 May 2025