Projects in Awesome Lists tagged with fair-data

https://github.com/abdenlab/oxbow

Oxbow makes genomic data ready for high-performance analytics.

apache-arrow bioinformatics data-science dataframe fair-data genomics multiomics ngs pandas polars python r rust-lang

Last synced: 07 Mar 2026

https://github.com/ComPlat/chemotion_ELN

Electronic Lab Notebook

eln fair-data rdm smart-lab

Last synced: 11 May 2025

https://github.com/microbiomedata/nmdc-schema

National Microbiome Data Collaborative (NMDC) unified data model

ecoinformatics fair-data genomics linkml metabolomics metadata microbiome microbiomedata mixs nmdc proteomics samples schema standards transcriptomics

Last synced: 10 Jun 2026

https://github.com/linkml/schemasheets

Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats

fair-data linkml metadata schemas shacl shape-languages sheets2linkml shex spreadsheets

Last synced: 05 Jul 2025

https://github.com/Bayer-Group/COLID-Documentation

The documentation repository is part of the Corporate Linked Data Catalog - short: COLID - application.

cloud-native colid data-catalog data-catalogue elasticsearch fair fair-data findable linked-data rdf shacl triplestore

Last synced: 28 Sep 2025

https://github.com/bayer-group/colid-documentation

The documentation repository is part of the Corporate Linked Data Catalog - short: COLID - application.

cloud-native colid data-catalog data-catalogue elasticsearch fair fair-data findable linked-data rdf shacl triplestore

Last synced: 12 Apr 2025

https://librarycarpentry.github.io/Top-10-FAIR/

Top 10 FAIR Data & Software Things

code4lib fair-data fair-principles fair-software library-carpentry research-software-engineering

Last synced: 25 Sep 2025

https://github.com/ethanbass/chromconverter

Parsers for chromatography data in R (HPLC-DAD/UV, GC-FID, MS)

cheminformatics chromatography fair-data gc-fid hplc hplc-dad hplc-uv metabolomics metabolomics-data open-data open-science r r-package rstats

Last synced: 19 Aug 2025

https://github.com/nfdi4plants/arctrl

Polyglot (.NET/JS/Python) library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

arc cwl fable-libraries fair-data fsharp isa rdm ro-crate

Last synced: 07 Apr 2025

https://github.com/utrechtuniversity/fair-cheatsheets

Make your research data and code FAIR with the UU FAIR Cheatsheets!

accessibility fair-data fair-principles fair-software findability interoperability research-data research-data-management research-software research-software-management reusability transparency utrecht-university

Last synced: 05 Feb 2026

https://github.com/bayer-group/colid-setup

The setup repository is part of the Corporate Linked Data Catalog - short: COLID - application. It helps setting up a local environment based on Docker Compose.

cloud-native colid data-catalog data-catalogue elasticsearch fair fair-data findable linked-data rdf shacl triplestore

Last synced: 25 Feb 2026

https://github.com/jesserobertson/earthchem-pyclient

Python client for the Earthchem REST and OGC APIs

fair-data geochemistry geology open-data open-science open-source

Last synced: 16 Jan 2026

https://github.com/rsgoncalves/text2term

a tool for mapping free-text descriptions of entities to ontology terms

data-annotation fair fair-data metadata metadata-curation ontology ontology-mapping text-mining

Last synced: 14 Jan 2026

https://github.com/ccb-hms/ontology-mapper

a tool for mapping free-text descriptions of entities to ontology terms

data-cleaning fair-data fair-principles metadata-cleaning ontology ontology-mapping ontology-search ontology-services owl owlready2

Last synced: 19 Feb 2026

https://github.com/co-cddo/ukgov-metadata-exchange-model

A metadata model for describing data assets for exchanging between UK government organisations.

dataset dcat fair-data

Last synced: 21 Jan 2026

https://github.com/tibhannover/2018-07-09-fair-data-and-software

Website of our Carpentries-based workshop from July 2018 (former contact: @katrinleinweber)

fair-data fair-principles hannover research-data-management research-software-engineering sustainable-software tibfds workshop-website

Last synced: 21 Jan 2026

https://github.com/linkml/valuesets

Common value sets (enums) for science, biomedicine, computing, and other areas

ai4curation fair-data linkml monarchinitiative semantics standards value-sets

Last synced: 05 Jan 2026

https://github.com/bayer-group/colid-data-marketplace-frontend

The Data Marketplace frontend repository is part of the Corporate Linked Data Catalog - short: COLID - application. Users can search for registered resources in COLID. It provides a search bar, aggregation filters and search result displaying including term highlighting.

cloud-native colid data-catalog data-catalogue elasticsearch fair fair-data findable linked-data rdf shacl triplestore

Last synced: 07 Apr 2026

https://github.com/maastrichtu-ids/fair-test

☑️ A library to build and deploy FAIR metrics tests APIs that can be used by FAIR evaluation services supporting the FAIRMetrics specifications, such as FAIR enough and the FAIR evaluator.

fair-data fair-principles testing-library

Last synced: 10 Apr 2025

https://github.com/au-research/fair-data-assessment-tool

fair-data

Last synced: 19 Jan 2026

https://github.com/bayer-group/colid-appdata-service

The appdata service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It maintains the user data and application settings.

cloud-native colid data-catalog data-catalogue elasticsearch fair fair-data findable linked-data rdf shacl triplestore

Last synced: 21 Jul 2025

https://github.com/maastrichtu-library/the-fair-extension

🧩 The FAIR extension: A web browser extension to evaluate Digital Object FAIRness

chrome-extension fair-data fair-digital-objects

Last synced: 04 Apr 2026

https://github.com/bayer-group/colid-search-service

The search service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It makes the data findable and provides indexing and search functionalities based on Elasticsearch.

cloud-native colid data-catalog data-catalogue elasticsearch fair fair-data findable linked-data rdf shacl triplestore

Last synced: 21 Sep 2025

https://github.com/pacifica/pacifica

Main Pacifica repository contains submodules to all Pacifica core software components

data-management fair-data science scientific-data

Last synced: 31 Jan 2026

https://github.com/bayer-group/colid-reporting-service

The reporting service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It offers an API for statistics of registered resources.

cloud-native colid data-catalog data-catalogue elasticsearch fair fair-data findable linked-data rdf shacl triplestore

Last synced: 12 Apr 2025

https://github.com/bayer-group/colid-scheduler-service

The scheduler service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It sets up recurring jobs for user notifications and analytics.

cloud-native colid data-catalog data-catalogue elasticsearch fair fair-data findable linked-data rdf shacl triplestore

Last synced: 18 Jul 2025

https://github.com/bayer-group/colid-editor-frontend

The editor frontend repository is part of the Corporate Linked Data Catalog - short: COLID - application. It offers user an metadata based user interface to register resources in COLID.

cloud-native colid data-catalog data-catalogue elasticsearch fair fair-data findable linked-data rdf shacl triplestore

Last synced: 12 Apr 2025

https://github.com/bayer-group/colid-registration-service

The registration service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It is the central microservice to register resources in the triplestore.

cloud-native colid data-catalog data-catalogue elasticsearch fair fair-data findable linked-data rdf shacl triplestore

Last synced: 02 Mar 2026

https://github.com/bayer-group/colid-indexing-crawler-service

The Indexing Crawler Service (ICS) repository is part of the Corporate Linked Data Catalog - short: COLID - application. It is responsible to extract data from a RDF storage system, transform and enrich the data and finally to send it via a message queue to the DMP Webservice for indexing.

cloud-native colid data-catalog data-catalogue elasticsearch fair fair-data findable linked-data rdf shacl triplestore

Last synced: 21 Aug 2025

https://github.com/sandyrogers/signposting-chrome-extension

Chrome browser extensions to report the existence of signposting.org links in HTTP/HTML headers

chrome-extension fair-data signposting

Last synced: 24 Apr 2025

https://github.com/sdsc-ordes/gimie

Extract linked metadata from repositories

cli fair-data git library linked-open-data metadata-extraction scientific-software

Last synced: 10 Apr 2025

https://github.com/rue-a/provo

PROV-O API for Python

fair-data prov prov-o provenance python rdf

Last synced: 11 Apr 2025

https://github.com/maastrichtu-ids/fair-enough-metrics

☑️ API to publish FAIR metrics tests written in python

evaluation-framework evaluation-metrics fair-data

Last synced: 15 Jun 2025

https://github.com/nfdi4cat/repo4cat

Documentation for the NFDI4Cat Central Data Repository (Repo4Cat)

dataverse documentation fair-data sphinx

Last synced: 14 Feb 2026

https://github.com/kit-data-manager/pit-service

Typed PID Maker – Create, resolve and modify PIDs with typed constraints, e.g. for FAIR DOs.

fair fair-data fair-principles java spring-boot

Last synced: 22 Apr 2025

https://github.com/maastrichtu-ids/fairificator

Tool to evaluate how FAIR is a resource URL using the F-UJI API

evaluation fair fair-data fair-principles metrics

Last synced: 20 Feb 2026

https://github.com/carpentries-incubator/fair-data-management-agriculture

FAIR Data Management for Long-term Agriculture Experiments

agriculture-research carpentries-incubator data-management english fair-data lesson pre-alpha

Last synced: 21 Feb 2026

https://github.com/esipfed/sereen

initial repo for Semantic Resource for Earth and Environment (SeREEn)

earth-science environment esip fair-data ontology owl planetary-science rdf semantic-web semantics thesaurus vocabulary

Last synced: 11 Feb 2026

https://github.com/fairdataihub/posters-science-docs

Documentation for the Posters.science platform.

documentation fair-data poster vitepress

Last synced: 03 Jun 2026

https://github.com/carpentries-incubator/fair-research-data-coursebook

♻️ FAIR Research Data Coursebook repository. Created and maintained by the Maastricht University Library based on the Library Carpentries lesson template

coursebook fair-data open-science research research-data-management

Last synced: 25 Jan 2026

https://github.com/sccn/nemar-citations

Insights on how NEMAR datasets are being used in the academic context

bids fair-data open-data

Last synced: 18 Jan 2026

https://github.com/imagingdatacommons/idc-comppath-reproducibility

Classification of lung tumor slide images with the NCI Imaging Data Commons

artificial-intelligence cloud-computing computational-pathology fair-data machine-learning reproducibility

Last synced: 27 Dec 2025

https://github.com/maastrichtu-ids/dqa-pipeline

Large-scale RDF-based Data Quality Assessment Pipeline

data-quality docker fair-data rdf sparql

Last synced: 01 May 2026

https://github.com/samuelbrudner/lab_archives_mcp

Chat with your electronic lab notebooks

electronic-lab-notebook eln fair-data json-ld knowledge-graph labarchives linked-data mcp model-context-protocol prov-o provenance python reproducible-research research-data-management semantic-search

Last synced: 28 May 2026

https://github.com/kodymoodley/fair-metadata-html-page-generator

A simple Python script to generate a static HTML page for viewing a JSON-LD metadata description of a dataset using Schema.org markup vocabulary.

fair fair-data fair-principles html json-ld jsonld metadata metadata-management python schema-org structured-data

Last synced: 08 Apr 2025

https://github.com/opendrr/openfile

An Open Science Platform for Pathways

fair-data open-science

Last synced: 29 Jan 2026

https://github.com/kodymoodley/fair-metadata-generator

A simple Python script to generate rich metadata descriptions of datasets in JSON-LD using Schema.org vocabulary

fair fair-data fair-principles fair-software json-ld metadata-description schema-org vocabulary

Last synced: 12 Aug 2025

https://github.com/dissco/fairplaybook

FAIR Research Data Management Playbook templates

fair-data rdm

Last synced: 16 Jan 2026

https://github.com/cthoyt/biomodels-metadata-analysis

Generate a summary of metadata annotations in the BioModels database

biomodels fair-data modeling reproducibility-crisis sbml systems-biology

Last synced: 15 Jun 2025

https://github.com/maastrichtu-ids/fairscape-helm

⛵ Helm chart to deploy the FAIRscape framework on Kubernetes and OpenShift

fair-data fair-software helm-charts kubernetes openshift

Last synced: 15 May 2026

https://github.com/fairdataihub/poster-sentry

Lightweight multimodal scientific poster classifier — text + visual + structural features. Part of posters.science.

document-classification fair-data multimodal posters-science quality-control scientific-posters

Last synced: 03 Jun 2026

https://github.com/kit-data-manager/pid-component

The PID-Component is a web component that can be used to display PIDs, ORCiDs, and possibly other identifiers in a user-friendly way. It is easily extensible to support other identifier types.

fair-data fair-do handle pid stenciljs storybook tailwindcss typescript web-component

Last synced: 17 Apr 2026

https://github.com/livmats/dtool-lookup-api

Python client API for communicating with dserver.

dserver dtool fair-data research-data-management rest-api-client

Last synced: 06 Apr 2026

https://github.com/yuummmer/fairy-lab

a FAIRy prototype that validates and guides datasets through repository-ready, standards-compliant metadata.

bioinformatics data-validation fair-data metadata reproducibility

Last synced: 22 May 2026

https://github.com/coreason-ai/coreason-urn-authority

The Epistemic Ledger & Capability Registry of the CoReason ecosystem

agents coreason cryptography fair-data ledger mcp registry zero-trust

Last synced: 22 May 2026

https://github.com/dnlbauer/django-signposting

A Django middleware that adds FAIR signposting headers to HTTP responses, making your web application more FAIR.

django fair fair-data links linkset rfc8288 signposting

Last synced: 15 Jul 2025

https://github.com/yuummmer/fairy-rulepacks-geo

Public CC0 rulepacks for FAIRy’s GEO workflows: validate sample/file manifests and generate preflight reports.

bioinformatics data-validation fair-data fairy gene-expression-omnibus geo metadata ncbi open-science reproducibility rnaseq

Last synced: 17 Mar 2026

https://github.com/sanskrit-lexicon/csl-standards

CSL standards/export validation workbench for TEI, OntoLex, FrAC, and interoperability profiles

fair-data lexicography ontolex sanskrit standards tei

Last synced: 27 Jun 2026

https://github.com/seedcase-project/template-data-package

An opinionated template for Data Packages built with Seedcase packages.

copier copier-template data-engineering data-infrastructure data-package fair-data frictionless-data template template-data-package template-project template-repository

Last synced: 06 Mar 2026

https://github.com/ranjithguggilla/glider-data-curation

Slocum glider mission archive pipeline: ingest, merge, QC, and package IOOS DAC trajectory data

cf-conventions data-curation fair-data glider gulf-of-mexico marine-science netcdf oceanography python qartod

Last synced: 13 Jun 2026

https://github.com/dissco/doi-nsc

Persistent identification of Digital Extended Specimens

digital-extended-specimens digital-specimens doi fair-data natural-science-collections pid

Last synced: 16 Jan 2026

https://github.com/egonw/fopworkshop

FAIR, Open , and Proprietary data workshop

fair fair-data opendata openscience workshop

Last synced: 04 Feb 2026

https://github.com/kit-data-manager/fairdo-cookbook

A cookbook about FAIR Digital Objects. Feel free to suggest recipes via issues.

fair-data fair-principles

Last synced: 30 Mar 2025

https://github.com/ranjithguggilla/iso19115-validator

ISO 19115-2, CF-1.8, and ACDD-1.3 metadata linter with Schematron policy rules, YAML DSL, FAIR scoring, and FastAPI web UI

acdd cf-conventions data-curation fair-data iso19115 marine-science metadata netcdf oceanography python

Last synced: 13 Jun 2026

https://github.com/yuummmer/fairy-rulepacks-darwincore

Darwin Core preflight checks (rulepacks) and tiny demo fixtures for FAIRy.

biodiversity darwin-core data-quality data-validation dwca fair-data fairy gbif metadata obis open-data research-data

Last synced: 04 Apr 2026

https://github.com/saibotmagd/fair_stats_aggregator

This repository hosts a prototype tool designed to analyze and aggregate FAIR (Findable, Accessible, Interoperable, and Reusable) statistics for a list of Digital Object Identifiers (DOIs).

fair fair-data nfdi nfdi4bioimage

Last synced: 04 Apr 2026