Projects in Awesome Lists tagged with fasta-sequences
A curated list of projects in awesome lists tagged with fasta-sequences .
https://github.com/chasewnelson/snpgenie
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
diversity-measurement dnds dnds-estimation evolution evolutionary-parameters fasta-sequences molecular-evolution natural-selection nei-gojobori next-generation-sequencing nucleotide nucleotide-diversity perl population-genetics sequence-analysis snp-report substitution-rate vcf vcf-files
Last synced: 23 Mar 2025
https://github.com/suchapalaver/fastas2kmers
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
fasta-format fasta-sequences kmer kmer-counting kmer-frequency-count kmer-length kmers
Last synced: 09 Apr 2025
https://github.com/sing-group/seda
SEquence DAtaset builder
bioinformatics fasta fasta-sequences java sequence-dataset-builder sequences
Last synced: 03 Jul 2025
https://github.com/yangao07/fxtools
fxtools: light-weight processing tool for FASTA/FASTQ/BAM format data
bam-files c fasta-sequences fastq-format samtools
Last synced: 27 May 2026
https://github.com/abhijeetsingh1704/clean_dna_fasta
Program to clean DNA fasta sequences
character cleanup dna-sequences fasta-sequences
Last synced: 11 Jan 2026
https://github.com/pswsm/fasta_cli_tools
A small fasta CLI toolkit developed in Rust
bioinformatics bioinformatics-tool cli cli-app fasta-sequences rust rust-lang
Last synced: 17 Jan 2026
https://github.com/abhijeetsingh1704/dupremover
Removes duplicate sequences in multifasta file
fasta fasta-format fasta-sequences unique
Last synced: 17 Aug 2025
https://github.com/tusharpandey003/fasta-sequence-analysis-web-app
Analysis of FASTA ,Protein,DNA sequence.
bioinformatics biotechnology data-science dna-sequence-analysis dna-sequences fasta fasta-sequence fasta-sequences nucleotide-sequence protein-sequences sequence-analysis streamlit web-application
Last synced: 17 May 2026
https://github.com/matthew-mosior/idris2-biocore
Idris (Idris2) port of the Haskell biocore library.
biocore fasta-format fasta-sequences haskell-port idris2
Last synced: 28 Jan 2026
https://github.com/abhijeetsingh1704/fasta2q
simple and convenient program to convert fasta sequences to fastq sequences
conversion fasta fasta-format fasta-sequences fastq fastq-files fastq-format fq sequence
Last synced: 19 Oct 2025
https://github.com/limitedeternity/fastautils
Various utilities for working with FASTA nucleotide sequences
bioinformatics dna-processing fasta-sequences flutter-web flutter-windows
Last synced: 14 Mar 2025
https://github.com/gauravcodepro/pacbiohifi-read-assimilator
a pacbiohifi read check for the quick view of the read types.
fasta-sequences fastq-files genome-analysis hifi pacbio-data pacbio-sequencing pangenome
Last synced: 19 Jul 2025
https://github.com/yoannpa/predicsites
PredicSites is a program allowing consensus patterns search on a DNA sequence.
bioinformatics consensus-algorithm dna-sequences fasta-sequences java pattern-recognition
Last synced: 25 Oct 2025
https://github.com/matthew-mosior/idris2-biofasta
Idris (Idris2) port of the Haskell biofasta library.
biofasta fasta-format fasta-sequences haskell-port idris2
Last synced: 15 Feb 2026
https://github.com/haschka/emacs-fasta-mode
A mode for fasta files
bioinformatics-tools emacs emacs-lisp fasta-format fasta-sequences
Last synced: 14 Jun 2026
https://github.com/haschka/pdb2fasta
Extracts the fasta sequence from protein stored in a PDB file
bioinformatics fasta-files fasta-sequences pdb-files unix-tools
Last synced: 30 May 2026
https://github.com/ramy-badr-ahmed/bioinformatics-misc-scripts
Miscellaneous Scripts in Bioinformatics
clinical-data-warehouse clinical-trial-management-system clinical-trials clinical-trials-retrieval database-design database-schema dna-processing dna-sequences fasta-sequences gz-compression mass-spectrometry-data md5-python mfg-test mgf peptide-identification peptide-sequences sequence-spectrum sql-cte sqlite
Last synced: 24 Apr 2026
https://github.com/abhijeetsingh1704/filterbylength
Filter fasta sequences by length
amino-acid-sequence fasta-sequences filtering length nucleotide-sequence
Last synced: 26 Oct 2025