Projects in Awesome Lists tagged with fiji-plugin
A curated list of projects in awesome lists tagged with fiji-plugin .
https://github.com/trackmate-sc/TrackMate
TrackMate is your buddy for your everyday tracking.
fiji-plugin image-analysis single-particle-tracking
Last synced: 07 May 2025
https://github.com/bonej-org/BoneJ2
Plugins for bone image analysis
fiji-plugin image-analysis image-processing imagej imagej-plugins java-8 maven-multimodule scientific-computing skeletal-biology travis-ci
Last synced: 07 May 2025
https://github.com/UU-cellbiology/ZstackDepthColorCode
Z-stack Depth Colorcode ImageJ FIJI plugin
colorcode fiji fiji-plugin imagej imagej-plugin microscopy utrecht-university
Last synced: 07 May 2025
https://github.com/saalfeldlab/n5-ij
ImageJ convenience layer for N5
fiji fiji-plugin hdf5 n5 ome-zarr-converter zarr
Last synced: 18 Jan 2026
https://github.com/mianalysis/mia
Modular, object-based analysis for ImageJ/Fiji
fiji-plugin image-analysis image-processing imagej modular
Last synced: 04 Mar 2026
https://github.com/uu-cellbiology/bigvolumebrowser
browsing large volumetric data and shapes
3d-microscopy 3d-volume bigdataviewer bigvolumeviewer fiji-plugin imglib2 java meshes point-cloud utrecht-university volumetric-rendering
Last synced: 01 Mar 2026
https://github.com/ekatrukha/CurveTrace
Curve tracing ImageJ plugin
curve-tracing fiji-plugin imagej-plugins microscopy
Last synced: 31 Oct 2025
https://github.com/thorstenwagner/ij-trajectory-classifier
This plugin segments and classify diffusion trajectories
classification diffusion fiji fiji-plugin imagej imagej-plugins random-forest renjin tracking trajectory-classifier
Last synced: 23 Jul 2025
https://github.com/joda01/evanalyzer
EVAnalyzer 1 - EV analyzing plugin for Fiji
bioinformatics biology ev fiji-plugin imagej-plugins
Last synced: 29 Jan 2026
https://github.com/goehringlab/saibr_fiji_plugin
A simple GUI-based FIJI plugin for performing spectral autofluorescence correction on biological images
fiji-plugin graphical-user-interface image-processing java
Last synced: 09 Jun 2026
https://github.com/thorstenwagner/ij-nanotrackj
NanoTrackJ is an ImageJ/Fiji plugin to characterize the size of nanoparticles by its diffusion trajectories.
diffusion-coefficient diffusion-trajectories fiji-plugin hydrodynamic-diameter imagej nanoparticles size-distribution
Last synced: 23 Jul 2025
https://github.com/laulauthom/fiji-qualiannotations
Fiji plugins for qualitative image annotations + analysis workflows for image-classification and data-visualization
annotations fiji-plugin ground-truth image-annotation-tool image-classification knime visualization
Last synced: 28 May 2026
https://github.com/sedflix/active-contours-api-for-fiji-imagej
This is an easy to use active contours api for Fiji(ImageJ).
active-contour fiji fiji-plugin imagej imagej-plugins levelset
Last synced: 19 Jul 2026
https://github.com/ciernialab/roimaper
FIJI macros to map an atlas of ROIs to images.
brain-regions fiji-plugin imagej-macro
Last synced: 04 Mar 2026
https://github.com/sedflix/embryosegmentation
An ImageJ PlugIn for cell segmentation in an embryo of c.elegans
embryogenesis fiji-plugin google-summer-of-code image-processing image-segmentation imagej-plugins machine-learning segmentation weka-api
Last synced: 11 Sep 2025
https://github.com/thorstenwagner/ij-irregular-watershed
Watershed for irregular objects
fiji-plugin image-processing imagej imagej-plugins splitting
Last synced: 23 Jul 2025