https://github.com/cytoflow/cytoflow

A Python toolbox for quantitative, reproducible flow cytometry analysis

analysis data-driven flow-cytometry-analysis fluorescence gate jupyter mixture-modeling notebooks python scientific-computing workflow

Last synced: 04 Apr 2025

https://github.com/CliMA/Land

Everything within the Land model (Soil Plant Atmosphere Module, Land Hydrology, etc)

canopy fluorescence julia land-surface-model sif soil-plant-atmosphere

Last synced: 27 Nov 2024

https://github.com/clima/land

Everything within the Land model (Soil Plant Atmosphere Module, Land Hydrology, etc)

canopy fluorescence julia land-surface-model sif soil-plant-atmosphere

Last synced: 09 Apr 2025

https://github.com/tlambert03/fpbase

The Fluorescent Protein Database

database fluorescence microscopy

Last synced: 09 Apr 2025

https://github.com/aelefebv/nellie

Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

biology fluorescence image-analysis image-processing machine-learning microscopy organelles segmentation tracking

Last synced: 11 Mar 2025

https://github.com/flika-org/flika

An interactive image processing program for biologists written in Python.

astrocytes biologists calcium fluorescence image-processing imagej microscopy neurons python

Last synced: 14 Nov 2024

https://github.com/sarthakjariwala/python_gui_apps

GLabViz - Interactive Analysis and Visualization Application for Scientific Data written in Python using Qt and pyqtrgaph

data-analysis data-visualization databrowser fluorescence fluorescence-decays-analysis fluorescence-microscopy-analysis fluorescence-microscopy-imaging image-analysis lifetime-analysis pyqtgraph python python-gui-apps qt qt-gui spectra-analysis spectral-analysis spectroscopy spectrum-analyzer uv-vis

Last synced: 15 Apr 2025

https://github.com/pmassicotte/eemr

Utilities for pre-processing emission-excitation-matrix (EEM).

dissolved-organic-matter emission excitation fluorescence optics

Last synced: 21 Mar 2025

https://github.com/opensmfs/fretbursts

Burst analysis software for single and multi-spot single-molecule FRET (smFRET) data.

burst-analysis fluorescence fret jupyter-notebook python single-molecule spectroscopy

Last synced: 20 Jan 2025

https://github.com/maurosilber/smo

Robust and unbiased estimation of the background distribution for fluorescence microscopy.

background background-subtraction distribution fluorescence

Last synced: 25 Mar 2025

https://github.com/federicomarini/flowcatchr

A framework for tracking and analyzing flowing blood cells in time lapse microscopy images

bioconductor fluorescence microscopy particles r tracking

Last synced: 15 Apr 2025

https://github.com/mihaitodor/particle_simulation

Simulation of Tumor Fluorescence Time Profiles

cancer-detection fluorescence simulation

Last synced: 22 Feb 2025

https://github.com/landoskape/cellector

A pipeline and GUI for determining which ROIs match features in a fluorescence image.

cell fluorescence gui image matching matching-algorithm roi roi-analysis

Last synced: 28 Jan 2025

https://github.com/wagad22/abc-laboratory

ABC-Laboratory is a prototypical simulation software calculating the fluorescence or absorption of different 'biomolecules'. It uses the Godot Game Engive (v.3) and is the result of my Bachelor Hands-on / internship.

absorption biochemistry bioinformatics biology biomolecular-simulation biomolecule chemistry fluorescence godot godot-engine godot-game-engine laboratory laboratory-exercises simulation

Last synced: 07 Apr 2025

https://github.com/cgohlke/icsdll

Interface to the image correlation spectroscopy library ICSx64.dll

correlation cplusplus fluorescence fluorescence-correlation fluorescence-fluctuations fluorescence-microscopy-imaging image-processing python spectroscopy

Last synced: 11 Nov 2024

https://github.com/christophmark/imagej-interactive-thresholding

ImageJ macros that automate the workflow of thresholding and analyzing the size and intensity of objects/regions in microscope images.

fiji fluorescence fluorescence-microscopy-imaging image-analysis image-processing image-segmentation imagej microscopy thresholding

Last synced: 16 Mar 2025

https://github.com/swharden/prairieview-quick-loader

ImageJ plugin to quickly load multiphoton imaging data from PrairieView folders

fluorescence fluorescence-microscopy-imaging imagej imagej-plugin microscopy multiphoton

Last synced: 27 Feb 2025

https://github.com/jonnor/sanctuary

arduino blacklight flowtrace fluorescence

Last synced: 02 Apr 2025