Projects in Awesome Lists tagged with freesurfer

https://github.com/aramis-lab/clinica

Software platform for clinical neuroimaging studies

ants bids-format brainweb freesurfer fsl machine-learning mrtrix3 neuroimaging neuroscience python scikit-learn spm

Last synced: 12 Nov 2024

https://github.com/raamana/visualqc

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

alignment anatomical-mri cortex fmri freesurfer medical-imaging mri-images neuroimaging neuroscience outlier-detection outlier-removal qc quality-control registration

Last synced: 21 Dec 2024

https://github.com/Qoala-T/QC

Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data

freesurfer machine-learning mri quality-control

Last synced: 12 Nov 2024

https://github.com/nyumedml/darts

Code for DARTS: DenseUnet-based Automatic Rapid Tool for brain Segmentation

artificial-intelligence brain-mri brain-segmentation deep-learning freesurfer medical-imaging pytorch unet

Last synced: 21 Dec 2024

https://github.com/dfsp-spirit/fsbrain

R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.

3d brain dti freesurfer mesh mri neuroimaging r research surface visualization voxel

Last synced: 17 Dec 2024

https://github.com/raamana/graynet

Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)

anatomical-mri cortical-network cortical-thickness feature-extraction freesurfer graph gray-matter machine-learning mindboggle network-analysis neuroimaging neuroscience structural-mri thickness vbm voxel-based

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/freesurferformats

GNU R package for reading and writing neuroimaging file formats. Not limited to FreeSurfer anymore, despite its name.

brain brain-atlas brain-surfaces curv dti fileformats freesurfer label mesh mgh mri neuroimaging parcellation r research surface voxel

Last synced: 17 Dec 2024

https://github.com/dipterix/three-brain-js

Javascript engine for 3D brain model (used by RAVE project)

ecog electrode-localization freesurfer ieeg mri mri-brain mri-images neuroscience nifti-viewer seeg webgl2

Last synced: 13 Dec 2024

https://github.com/dfsp-spirit/neuroformats.jl

Handling of structural neuroimaging file formats for Julia.

brain cortex dti fileformats freesurfer julia mesh mri neuroimaging neuroscience surface voxel

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/brainload

A python module designed to reduce your brain load while accessing FreeSurfer brain surface and morphometry data files of single subjects and groups.

brain freesurfer mesh morphometry mri neuroimaging nibabel python surface voxel

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/freesurfer_parallel_scripts

Shell scripts to run FreeSurfer's recon-all in parallel on multi-core machines.

bash freesurfer neuroimaging parallel-computing workstation

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/abide_preproc_smri_freesurfer6

Data from our own pre-processing of the ABIDE I sMRI dataset (1035 subjects) in FreeSurfer v6.

abide-data brain brain-imaging computational-neuroimaging dataset derived-data freesurfer mri

Last synced: 19 Dec 2024

https://github.com/dfsp-spirit/libfs

A header-only, no-dependency, C++11 library for accessing FreeSurfer neuroimaging file formats.

brain fileformats freesurfer label mesh mgh mri neuroimaging parser surface volume voxel

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/neuroformats-rs

Handling of structural neuroimaging file formats for Rust.

3d brain brainanatomy fileformats freesurfer images mesh mri neuroimaging neuroscience rust voxel

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/regfusionr

R implementation of registration fusion method for MNI152 - 305 mapping.

freesurfer fsaverage mni152 mni305 mri neuroimaging registration registration-fusion voltosurf

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/anonsurfer

Anonymization of freesurfer output based on metadata dropping and defacing.

anonymization deface freesurfer metadata mri privacy-protection

Last synced: 19 Dec 2024

https://github.com/dfsp-spirit/neuro

Go module for reading and writing structural neuroimaging file formats. Supports FreeSurfer MGH, MGZ, and related formats.

biomedical brain fileformats freesurfer go golang mri mri-images neuroimaging neuroscience

Last synced: 19 Dec 2024

https://github.com/dfsp-spirit/brainloc

Given a brain coordinate or cluster in MNI305 space, compute MNI152 and Talairach coordinates and find the closest brain regions.

atlas brain coordinate-systems distances freesurfer fsaverage mri neuroimaging

Last synced: 19 Dec 2024

https://github.com/sebastientourbier/connectomemapper-ubuntu16.04

Docker image that provides a Ubuntu 16.04 (Xenial) with all CMP pre-requisite software installed

afni ants dipy freesurfer fsl mrtrix3 neuroscience

Last synced: 12 Nov 2024

https://github.com/dipterix/ieegio

File input output for neuroscience study

bci2000 brain brainvision dbs edf electrophysiology ephys freesurfer ieeg neuroimaging neuroscience nifti nwb-format r

Last synced: 13 Dec 2024