Projects in Awesome Lists tagged with fsl

https://github.com/aramis-lab/clinica

Software platform for clinical neuroimaging studies

ants bids-format brainweb freesurfer fsl machine-learning mrtrix3 neuroimaging neuroscience python scikit-learn spm

Last synced: 07 Aug 2025

https://github.com/muschellij2/fslr

FSL-R Interface package

fsl fslr neuroimaging neuroimaging-analysis neuroimaging-data-science

Last synced: 05 Apr 2025

https://github.com/natlee/nipype-preprocess-on-brain-mr

The project is used to do preprocessing on brain MR images by using Nipype.

acpc ants bias-field-correction brain brain-imaging brain-mri brain-segmentation dockerfile enhancement fsl medical-image-processing mr mri nipype pipeline python registration segmentation skull-stripping

Last synced: 11 Jul 2025

https://github.com/robertoostenveld/bids-tools

Tools for dealing with neuroimaging data in the BIDS structure

afni bids fieldtrip fmri fsl meg mri neuroimaging spm

Last synced: 12 Jun 2025

https://github.com/carpentries-incubator/sdc-bids-dmri

Introduction to dMRI

ants bids carpentries-incubator diffusion-mri dipy dmri dwi fsl lesson neuroimaging pre-alpha programming python tractography

Last synced: 02 Sep 2025

https://github.com/lamyj/erwin

Quantitative MRI toolbox in Python

ants cbf diffusion-mri field-mapping fsl magnetization-transfer motion-correction mri mrtrix3 nifti quantitative quantitative-susceptibility-mapping relaxometry segmentation

Last synced: 30 Apr 2025

https://github.com/wpmed92/webmri

An Emscripten port of BET and FLIRT of FMRIB Software Library

brainbrowser brainextraction emscripten fsl neuroimaging

Last synced: 12 Apr 2025

https://github.com/angeella/pari

pARI: permutation-based All-Resolutions Inference

ari cluster-map copes discoveries fmri fsl permutation selective-inference simultaneous-confidence-bounds spm

Last synced: 22 Oct 2025

https://github.com/aramis-lab/clinica-pydra-fsl

Pydra tasks for FSL designed for Clinica

fsl neuroimaging pydra

Last synced: 16 Aug 2025

https://github.com/mj12358/fsl-work-map

A Field Service Lightning map displaying service appointments or work orders and much more.

apex fsl salesforce visualforce

Last synced: 19 Jul 2025

https://github.com/shawntz/fmri

a (work in progress) attempt to transform the stanford memory lab's internal fmri preprocessing scripts into a generalizable template for consistency within and across lab projects

computing-cluster fmri fmri-preprocessing fmriprep freesurfer fsl reproducible-science slurm-job-scheduler stanford workflows

Last synced: 29 Oct 2025

https://github.com/dangom/icicle-tree-melodic

Icicle tree to visualize the variance explained by each IC component, as output from MELODIC.

fsl melodic neuroimaging

Last synced: 04 Oct 2025

https://github.com/jennieablog/syntheticfsl

A database application for signing exact English in Filipino Sign Language (FSL) using the JASigning virtual signing system that sythesises natural sign language performance using virtual human characters.

filipino-sign-language fsl sign signlanguage

Last synced: 10 Apr 2026

https://github.com/stonecypher/fsl_traffic_light_ukrainian

The FSL traffic light example, translated to Ukrainian by @miles91

fsl fsl-machine jssm jssm-machine machine state-machine

Last synced: 31 Mar 2025

https://github.com/andrewrosss/nipype-generate-fieldmaps

Nipype workflow to generate fieldmaps from EPI acquisitions with differing phase-encoding directions

epi fieldmap fsl neuroimaging neuroscience nipype phase-encoding topup

Last synced: 13 Oct 2025

https://github.com/mj12358/fsl-resource-calendar

A Field Service Lightning calendar displaying service resources and their service appointments.

apex fsl salesforce visualforce

Last synced: 23 Apr 2026

https://github.com/schluppeck/dockerize-analysis

build a container from which EH's analysis code (and others) can be run, without relying on windows/mac compatibility

docker fsl nipype

Last synced: 11 May 2026

https://github.com/andrewrosss/nipype-fsl-anat

Nipype interface(s) wrapping the fsl_anat command line tool

anatomical-mri fsl fsl-anat neuroimaging neuroscience nipype

Last synced: 12 Apr 2025

https://github.com/exlava/alc-dti

Alcohol study DTI Analyses

bash-script diffusion-mri fsl mri-brain neuroimaging neuroscience

Last synced: 03 May 2026

https://github.com/hgresseau/asl-processing-with-ants

Guide to perform cerebral blood flow (CBF) processing on an arterial spin labelling (ASL) image with ANTs and FSL. The required codes are provided and explained.

ants blood-flow-imaging code coding fsl matlab mri-analysis mri-data terminal