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Projects in Awesome Lists tagged with genome-analysis
A curated list of projects in awesome lists tagged with genome-analysis .
https://github.com/mcveanlab/mccortex
De novo genome assembly and multisample variant calling
contigs cortex de-bruijn-graphs genome-analysis genome-assembly genome-graph genomics kmer variant-calling
Last synced: 08 Aug 2024
https://github.com/fmalmeida/bacannot
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
annotation antimicrobial-genes-annotation barrnap genome-analysis genome-browser genomic-islands-prediction insertion-sequences ko-annotation methylation-annotation mobile-genetic-elements nextflow phigaro pipeline prophage-sequences-prediction prophages reproducible-research rgi rrna-prediction virulence-factor virulence-genes
Last synced: 02 Aug 2024
https://github.com/brandonsaldan/codex
A minimal genetic data explorer that processes all genetic information locally.
bioinformatics dna genetics genome-analysis snpedia
Last synced: 01 Aug 2024
https://github.com/genenotebook/genenotebook
A collaborative notebook for genes and genomes
d3js data-warehouse expression-browser genome-analysis genome-annotation genome-browser meteorjs mongodb nodejs reactjs
Last synced: 30 Sep 2024
https://github.com/bblodfon/rsat-rest-java-clients
Java Clients for the Regulatory Sequence Analysis Tools (RSAT) REST API
genome-analysis java-8 regulation
Last synced: 01 Oct 2024
https://github.com/codecreatede/genomicinterval.jl
a genomic interval analyzer using julia
bioinformatics genome-analysis genome-annotation julia-language julia-library
Last synced: 29 Sep 2024
https://github.com/codecreatede/mongodb-genome
a mongodb implementation for pacbiohifi genome and genome annotation
bioinformatics database database-management database-schema genome-analysis genome-bioinformatics genome-informatics mongodb mongodb-database python3
Last synced: 29 Sep 2024
https://github.com/codecreatede/genome-dataultilities
genome scale analysis using command bash
bash-script bash-scripting genome-analysis genome-assembly-utilities genome-informatics genome-utilities shell shell-script
Last synced: 26 Sep 2024