Data

Tools

Indexes

Applications

Experiments

Awesome

An open API service indexing awesome lists of open source software.

Projects in Awesome Lists tagged with genomics-data

A curated list of projects in awesome lists tagged with genomics-data .

https://github.com/ncbi/datasets

NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

genomics-data ncbi

Last synced: 03 Mar 2026

https://github.com/jolespin/compositional

Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualizations.

compositional-data-analysis genomics-data microbiome

Last synced: 05 Oct 2025

https://github.com/s1monj/nft-peppers

Generative Art NFTs from Genomic Data

animejs cytoscapejs genomics-data genomics-visualization javascript

Last synced: 07 May 2025

https://github.com/kyegomez/prometheus

Welcome to Prometheus, the revolutionary AI model that allows you to generate DNA sequences for any creature you can imagine. Whether it’s a pink panda, an elephant-sized turtle, or a completely new lifeform from your wildest dreams, Prometheus decodes the mystery of biology and synthesizes genetic blueprints with precision.

ai bioml gene-generation genes genomic genomics genomics-data llms mamba ml rnns ssm

Last synced: 07 May 2025

https://github.com/tseemann/kounta

🧮 🔢 Generate multi-sample k-mer count matrix from WGS

data-science genomics-data gwas kmer-counting machine-learning

Last synced: 12 Apr 2025

https://github.com/histolab/gdc-api-wrapper

Genomic Data Commons API wrapper

api api-wrapper cancer genomics-data tcga tcia

Last synced: 21 Feb 2026

https://github.com/bio-ontology-research-group/starvar

STARVar:Symptom based Tool for Automatic Ranking of Variants using evidence from literature and genomes

genomics-data text-mining variant-priorisation variant-ranking

Last synced: 25 Jan 2026

https://github.com/lotharukpongjs/phylomapr

Get precomputed gene age maps (phylomaps) in R

bioinformatics gene-age genomics-data phylostratigraphy

Last synced: 02 Apr 2025

https://github.com/astrabert/simon-reads

simON-reads ("Simulate Oxford Nanopore Reads") is a simple yet powerful tool to generate fastq files containing MiniON-like long reads

artificial-data automation bioinformatics genomics-data long-read-sequencing oxford-nanopore testing third-generation-sequencing

Last synced: 11 Jun 2026

https://github.com/yaacoo/multipgs_py

multiPGS_py is a fast, simple and low-memory python method to calculate polygenic scores (PGS/PRS)

bioinformatics genomics-data polygenic-scores python3 risk-prediction

Last synced: 02 Mar 2026

https://github.com/pdimens/mimick

Linked-read sequence simulator

fastq genomics genomics-data genomics-simulations linked-reads

Last synced: 08 Jun 2026

https://github.com/astrabert/drosmel-in-asia

Drosophila melanogaster IndSeq and PoolSeq genomics data in Asia and Europe

academic-project asia data-visualization drosophila-melanogaster genomics-data population-genomics

Last synced: 19 Mar 2026

https://github.com/danymukesha/ensembl-variant-lookup

Python tool built for a user-friendly interface for searching individual variants, batch queries, and exploring gene regions from the Ensembl database.

api ensembl-rest genomics-data variants

Last synced: 08 Jul 2025