Projects in Awesome Lists tagged with genotype
A curated list of projects in awesome lists tagged with genotype .
https://github.com/DecodeGenetics/graphtyper
Population-scale genotyping using pangenome graphs
bioinformatics decode-genetics genetics genotype graph variants
Last synced: 10 May 2025
https://github.com/brentp/peddy
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
ancestry bioinformatics genomics genotype pedigree vcf
Last synced: 07 Apr 2025
https://github.com/limix/pandas-plink
PLINK reader for Python.
bed-format file-format genotype plink reader
Last synced: 03 Oct 2025
https://github.com/sbslee/pypgx
A Python package for pharmacogenomics (PGx) research
api cli cyp2d6 genotype pgx pharmacogenetics pharmacogenomics phenotype star-alleles stargazer structural-variation
Last synced: 04 Jan 2026
https://github.com/0xTCG/aldy
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
adme allele bioinformatics cyp2d6 genotype illumina pgrnseq sequencing
Last synced: 14 Mar 2025
https://github.com/shz9/magenpy
Modeling and Analysis of (Statistical) Genetics data in python
genotype gwas ldsc linkage-disequilibrium phenotype prs simulation
Last synced: 01 Jul 2026
https://github.com/gregor-mendel-institute/snpmatch
A simple python library to identify the most likely strain from the population
1001genomes arabidopsis arageno genotype genotyping genotyping-by-sequencing pipeline snpmatch snps
Last synced: 10 Apr 2025
https://github.com/shz9/tokyo-symposium-2024
Tokyo Symposium on Genomic Medicine (2024)
genotype gwas polygenic polygenic-risk-scores prs tutorial workshop
Last synced: 01 Jul 2026
https://github.com/wwtg99/predict_height
Predict height by gender and genotypes using machine learning.
genotype height machine-learning scikit-learn
Last synced: 29 Apr 2026
https://github.com/imperialcollegelondon/cgps-genotyphi
CGPS implementation of Genotyphi for assembled genomes.
epidemiology genomics genotype salmonella typhi
Last synced: 12 Apr 2025
https://github.com/harrisonv789/ai_evolution
Demonstration of an Artificial Evolution process on a fleet of Boid ships collecting gold using Unreal Engine 4.
artificial-evolution artificial-life boids genotype unreal-engine-4
Last synced: 09 Jul 2026
https://github.com/mr-eyes/genofreq
summarize and visualize the genotypes categories per sample in a VCF file
bioinformatics bioinformatics-tool bioinformatics-visualization genotype genotype-data variant-calling vcf vcftools
Last synced: 10 Jul 2026
https://github.com/lieberinstitute/brainstorm
Matching genotype and RNA-seq data to conform IDs of brain samples
genotype quality-control rna-seq rstats
Last synced: 13 Feb 2026
https://github.com/pblischak/polyfreqs
polyfreqs: an R package for Bayesian population genomics in autopolyploids
bayesian-population-genomics c-plus-plus cran genotype r rcpp
Last synced: 12 Apr 2026
https://github.com/maehler/vcfsubsample
Subsample a VCF file in order to fix the minor allele frequency across SNPs
bioinformatics genomics genotype vcf
Last synced: 25 Mar 2025
https://github.com/jubayer98/fix-genotype
The repository processes a VCF file to filter and transform its data based on specific genomic criteria.
Last synced: 12 Jul 2026
https://github.com/mmkim1210/1kg
🗺️Download and process 1000 Genomes genotype for ancestry-specific LD reference panel
Last synced: 10 Apr 2025
https://github.com/girkovarpa/dmxx-s-eye-colour-project-v.2
Public submissions to DMXX's Eye Colour Project (v.2) at Anthrogenica. Excludes submissions not containing data for every SNP in their panel.
23andme anthrogenica color csv dataset dna eye genotype phenotype
Last synced: 03 Jan 2026
https://github.com/amrverse/amrrulebrowser
Web browser to interactively explore AMRrules
Last synced: 14 Jul 2026
