Projects in Awesome Lists tagged with haplotype
A curated list of projects in awesome lists tagged with haplotype .
https://github.com/deepomicslab/SpecHLA
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
allelic-imbalance cancer genotype-frequency haplotype hla-sequence hla-typing human-leukocyte-antigens immunity local-assembly loh loss-of-heterozygosity nanopore pacbio-data phase reads-binning
Last synced: 14 Mar 2025
https://github.com/cannin/snp_plotter
snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.
Last synced: 30 Mar 2025
https://github.com/pdimens/harpy
Process haplotagging data, from raw sequences to phased haplotypes, batteries included.
bioinformatics haplotype linked-reads pipeline sequencing variant-calling
Last synced: 11 Apr 2025
https://github.com/daissi/thesias
THESIAS: Testing Haplotype Effects In Association Studies
association-analysis association-studies bioinformatics genomics haplotype java-interface
Last synced: 18 Dec 2024
