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Projects in Awesome Lists tagged with haplotype

A curated list of projects in awesome lists tagged with haplotype .

https://github.com/deepomicslab/SpecHLA

SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

allelic-imbalance cancer genotype-frequency haplotype hla-sequence hla-typing human-leukocyte-antigens immunity local-assembly loh loss-of-heterozygosity nanopore pacbio-data phase reads-binning

Last synced: 30 Jul 2024

https://github.com/pdimens/harpy

Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.

bioinformatics haplotype linked-reads pipeline sequencing variant-calling

Last synced: 30 Jul 2024