Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
https://github.com/aidenlab/juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
3d-genome 3d-genome-browser bioinformatics genomics hi-c ngs
Last synced: 02 Jul 2024
https://github.com/3DGenomes/TADbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
3d-models chromatin hi-c mapping ngs python
Last synced: 02 Jul 2024
https://github.com/XiaoTaoWang/TADLib
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
bioinformatics chromatin contact-matrix cooler genomics hi-c python tad tads
Last synced: 02 Jul 2024
https://github.com/lh3/hickit
TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C
Last synced: 13 Jun 2024
https://github.com/higlass/higlass
Fast, flexible and extensible genome browser.
gehlenborglab genomics hi-c higlass visualization
Last synced: 13 May 2024
https://github.com/maxplanck-ie/snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
atac-seq bisulfite-sequencing chip-seq hi-c ngs rna-seq snakemake workflow
Last synced: 08 May 2024
https://github.com/rjdkmr/gcMapExplorer
Genome Contact Map Explorer - gcMapExplorer. Visit:
bioinformatics genomic-data-analysis hi-c
Last synced: 18 Mar 2024
