Projects in Awesome Lists tagged with high-throughput-sequencing
A curated list of projects in awesome lists tagged with high-throughput-sequencing .
https://github.com/brentp/hts-nim
nim wrapper for htslib for parsing genomics data files
bioinformatics genomics high-throughput-sequencing htslib nim nim-lang
Last synced: 11 Mar 2025
https://github.com/bioinform/varsim
VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
genomics high-throughput-sequencing simulation validation
Last synced: 16 Dec 2025
https://github.com/biojulia/bioalignments.jl
Sequence alignment tools
bam-files bioinformatics biojulia biology dna-sequences high-throughput-sequencing sam-files sequence-alignment sequence-analysis smith-waterman-alignment
Last synced: 15 Apr 2025
https://github.com/brentp/bigwig-nim
command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig
bigbed bigwig genomics high-throughput-sequencing nim nim-lang
Last synced: 10 Sep 2025
https://github.com/brentp/genoiser
use the noise
bioinformatics genomics high-throughput-sequencing nim nim-lang
Last synced: 12 Jun 2025
https://github.com/pombo-lab/gamtools
Processing, quality control and analysis of GAM datsets
chromatin high-throughput-sequencing molecular-biology python python2 python3
Last synced: 14 Jan 2026
https://github.com/brentp/bpbio
basepair bio: a single binary with many useful genomics subtools.
bam cram genomics genomics-visualization high-throughput-sequencing structural-variation
Last synced: 28 Jun 2025
https://github.com/brentp/d4-nim
nim-lang wrapper for https://github.com/38/d4-format
bioinformatics genomics high-throughput-sequencing
Last synced: 11 Jun 2025
https://github.com/gear-genomics/bgen
Barcode Generator
dna dna-barcode dna-sequences dna-sequencing gear-genomics genomics high-throughput-sequencing
Last synced: 18 Jan 2026
https://github.com/zavolanlab/multiqc-plugins
Custom plugins for the MultiQC tool.
bioinformatics bioinformatics-tool high-throughput-sequencing
Last synced: 16 Jan 2026
https://github.com/zavolanlab/tin-score-calculation
Given a set of BAM files and a gene annotation BED file, calculates the Transcript Integrity Number (TIN) for each transcript.
bioinformatics high-throughput-sequencing quality-control rna-seq
Last synced: 16 Jan 2026
https://github.com/nigms/16srrna-microbial-analysis
This repository provides a cloud-based learning module for microbial analysis of 16S rRNA sequencing data. It covers principles, data preprocessing, taxonomic classification, and diversity analysis using R and AWS SageMaker.
16srna aws-sagemaker bioinformatics computational-biology dada2 docker-container genomic-data-analysis ggplot2 high-throughput-sequencing microbiome phyloseq r-programming sequence-processing taxonomic-classification
Last synced: 17 Jun 2025
https://github.com/pblischak/fluidigm2purc
Automated processing and haplotype inference for double-barcoded PCR amplicons
fluidigm high-throughput-sequencing phylogenomics polyploid
Last synced: 15 May 2025
