Projects in Awesome Lists tagged with hmmer
A curated list of projects in awesome lists tagged with hmmer .
https://github.com/tseemann/barrnap
:microscope: :leo: Bacterial ribosomal RNA predictor
annotations hmm-model hmmer ribosomal rna rnammer rrna
Last synced: 12 Apr 2025
https://github.com/althonos/pyhmmer
Cython bindings and Python interface to HMMER3.
bioinformatics cython-library hidden-markov-model hmmer hmmer3 python-bindings python-library sequence-analysis
Last synced: 20 Mar 2025
https://github.com/robaina/pynteny
Query sequence database by HMMs arranged in predefined synteny structure
bioinformatics computational-biology genomics hmm hmmer metagenomics prokaryotic-genomes python synteny synteny-block
Last synced: 19 Mar 2025
https://github.com/ctskennerton/kegg_hmm_models
Create HMMs from KEGG orthologs
bioinformatics hidden-markov-model hmm hmmer kegg kegg-ortholog kegg-pathway-database
Last synced: 02 Apr 2025
https://github.com/ibchgenomic/proteogenomics
proteogenomics for protein analysis
bioinformatics euclidean-algorithm euclidean-distances genome-analysis genome-annotation hmm hmm-model hmmer pdb pdb-files
Last synced: 30 Mar 2025
https://github.com/biogenies/plastogram
Predicts subplastid localization of proteins along with sequence origin (plastid- or nuclear-encoded).
bioinformatics chloroplast hmm-profile hmmer plastid r-package random-forest subchloroplast-localization subplastid-localization
Last synced: 13 Mar 2025
https://github.com/sciencegenome/proteome-hmm
rust based hmm domain
bioinformatics genome-analysis genome-annotation hmm hmm-model hmmer
Last synced: 16 Feb 2025
