Projects in Awesome Lists tagged with htslib
A curated list of projects in awesome lists tagged with htslib .
https://github.com/pysam-developers/pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
bioinformatics htslib ngs python
Last synced: 18 Feb 2026
https://github.com/samtools/htslib
C library for high-throughput sequencing data formats
bam bcf bioinformatics cram htslib ngs sam vcf
Last synced: 29 Dec 2025
https://github.com/seqan/seqan
SeqAn's official repository.
alignment bioinfomatics blast bwt cpp14 fasta fastq-format high-performance htslib indexing sam-bam seqan sequence-alignments simd suffixarray
Last synced: 15 May 2025
https://github.com/brentp/cyvcf2
cython + htslib == fast VCF and BCF processing
bioinformatics cython genomics htslib vcf
Last synced: 27 Jan 2026
https://github.com/brentp/hts-nim
nim wrapper for htslib for parsing genomics data files
bioinformatics genomics high-throughput-sequencing htslib nim nim-lang
Last synced: 11 Mar 2025
https://github.com/illumina/paragraph
Graph realignment tools for structural variants
genotyping htslib structural-variation variant-calling vcf
Last synced: 09 Jul 2025
https://github.com/Illumina/paragraph
Graph realignment tools for structural variants
genotyping htslib structural-variation variant-calling vcf
Last synced: 10 May 2025
https://github.com/brentp/hts-python
pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
bam bioinformatics fasta genomics htslib python sam
Last synced: 21 Mar 2025
https://github.com/brentp/hts-zig
ziglang + htslib
bioinformatics genomics hacktoberfest htslib zig ziglang
Last synced: 29 Oct 2025
https://github.com/zilong-li/vcfppr
The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049
bioinformatics fastr htslib population-genetics population-genomics rstats vcf vcf-data visulization
Last synced: 22 Jun 2025
https://github.com/kojix2/ruby-htslib
HTSlib bindings for Ruby
bam bcf bioinformatics genomics htslib ruby sam
Last synced: 25 Aug 2025
https://github.com/bio-cr/hts.cr
HTSlib bindings for Crystal
bam bcf bioinformatics crystal crystal-bindings genomics htslib
Last synced: 03 Jul 2025
https://github.com/wtsi-npg/bambi
Process Illumina instrument data into SAM/BAM/CRAM files.
bam-files bioinformatics htslib illumina
Last synced: 21 Jan 2026
https://github.com/bio-cr/bam-filter
Use simple expressions to filter a BAM/CRAM file
bam bioinformatics crystal genomics htslib
Last synced: 20 Aug 2025
https://github.com/lindenb/bcfselectgt
VCF/Bcf genotypes filtering using htslib
bcf bioinformatics filter htslib vcf
Last synced: 25 May 2026
https://github.com/lindenb/htsplusplus
Select variants from VCF/BCF spaced by a distance 'd'.
bcf bioinformatics c distance htslib variants vcf
Last synced: 25 Apr 2026
https://github.com/yuzukitsuru/tts-tools
Some useless thing for Speech Synthesis System
hmm htk hts htslib speech-synthesis
Last synced: 17 Mar 2025
https://github.com/rhpvorderman/htspy
Fast pythonic BAM processing according to the HTS format specifications..
Last synced: 21 Apr 2026
