https://github.com/biomedical-imaging-group/orientationj

ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection

directionality imagej-plugins orientation structure-tensor vector-field

Last synced: 27 Oct 2025

https://github.com/bonej-org/BoneJ2

Plugins for bone image analysis

fiji-plugin image-analysis image-processing imagej imagej-plugins java-8 maven-multimodule scientific-computing skeletal-biology travis-ci

Last synced: 07 May 2025

https://github.com/imagingbook/imagingbook-public

Image processing software for textbooks by W. Burger & M. Burge

burger-burge digital-image-processing imagej imagej-plugins imagingbook java

Last synced: 29 Oct 2025

https://github.com/emx77/ASI_MTF

Imagej macro to calculate the MTF based on a knife edge measurement

electron-microscopy image-analysis imagej imagej-macro imagej-plugins mtf point-spread-function x-ray-imaging

Last synced: 07 May 2025

https://github.com/ekatrukha/CurveTrace

Curve tracing ImageJ plugin

curve-tracing fiji-plugin imagej-plugins microscopy

Last synced: 31 Oct 2025

https://github.com/thorstenwagner/ij-blob

ImageJ library to detect and analyse connected components (blobs) in binary images

binary-image component-analysis fiji image-analysis imagej imagej-plugins

Last synced: 23 Jul 2025

https://github.com/ij-plugins/ijp-debayer2sx

Raw Bayer pattern to color image converters

bayer-filter bayer-pattern imagej imagej-plugins

Last synced: 07 Oct 2025

https://github.com/rocsg/fijirelax

FijiRelax: 3D+t multi-echo spin-echo sequences MRI analysis

image-processing imagej imagej-plugins java modeling mri relaxation-time

Last synced: 19 Oct 2025

https://github.com/sebmilardo/errorlevelanalysis

Error Level Analysis (ELA) in ImageJ

image-processing imagej-plugins java

Last synced: 14 Jul 2025

https://github.com/laulauthom/maskfromrois-fiji

Fiji plugins for the creation of binary and semantic masks from ROIs in the RoiManager. Works with stacks too.

ground-truth image-annotation imagej-plugins roi segmentation

Last synced: 12 Apr 2025

https://github.com/weisongzhao/adaptivemedian.imagej

v0.1.0, Adaptive Median fiter - imageJ plugin

filter-plugin image image-processing imagej-plugins java

Last synced: 13 Apr 2025

https://github.com/jpsacha/sbt-imagej

sbt-imagej is an SBT (Simmple Build Tool) plugin that that helps with development of ImageJ plugins

imagej imagej-plugins sbt-imagej sbt-plugin scala

Last synced: 07 Mar 2026

https://github.com/joda01/evanalyzer

EVAnalyzer 1 - EV analyzing plugin for Fiji

bioinformatics biology ev fiji-plugin imagej-plugins

Last synced: 29 Jan 2026

https://github.com/thorstenwagner/ij-trajectory-classifier

This plugin segments and classify diffusion trajectories

classification diffusion fiji fiji-plugin imagej imagej-plugins random-forest renjin tracking trajectory-classifier

Last synced: 23 Jul 2025

https://github.com/borda/ij-cmp-bia

Extension for ImageJ (Fiji) by BIA segmentation methods as plugins and some other useful API for image segmentation.

imagej-plugins

Last synced: 11 Sep 2025

https://github.com/sedflix/active-contours-api-for-fiji-imagej

This is an easy to use active contours api for Fiji(ImageJ).

active-contour fiji fiji-plugin imagej imagej-plugins levelset

Last synced: 13 Oct 2025

https://github.com/syncrossus/ijcarddetector

A playing card detection plugin for ImageJ.

binarization canny canny-edge-detection connected-components edge-detection gaussian-filter hough-transform hysteresis image-processing imagej imagej-plugins java otsu pattern-matching pattern-recognition playing-cards sobel template-matching

Last synced: 20 Jun 2026

https://github.com/syngenta/imagej-plugins

ImageJ Plugins

image-processing imagej-plugins java

Last synced: 29 May 2026

https://github.com/atbest/imagej-cellcounter

Modified Cell Counter plugin for ImageJ.

cell-counter imagej-plugins

Last synced: 15 Mar 2025

https://github.com/biop/ijp-gabriel-graph

graphs imagej imagej-plugins

Last synced: 01 Mar 2026

https://github.com/sedflix/embryosegmentation

An ImageJ PlugIn for cell segmentation in an embryo of c.elegans

embryogenesis fiji-plugin google-summer-of-code image-processing image-segmentation imagej-plugins machine-learning segmentation weka-api

Last synced: 11 Sep 2025

https://github.com/jdebes/image-segmentation-imagej-plugin

ImageJ plugin containing a collection image segmentation algorithms.

image-processing image-segmentation imagej-plugins imagej2 region-growing region-growing-segmentation

Last synced: 23 Jan 2026

https://github.com/thorstenwagner/ij-irregular-watershed

Watershed for irregular objects

fiji-plugin image-processing imagej imagej-plugins splitting

Last synced: 23 Jul 2025