https://github.com/hassony2/kinetics_i3d_pytorch

Inflated i3d network with inception backbone, weights transfered from tensorflow

3d-convolutional-network i3d inception-v1 inflated-network kinetics pytorch pytorch-flow-predictions pytorch-rgb-predictions weight

Last synced: 16 Nov 2025

https://github.com/ReactionMechanismGenerator/RMG-Py

Python version of the amazing Reaction Mechanism Generator (RMG).

chemistry chemistry-discovery kinetics python reactions thermodynamics

Last synced: 10 May 2025

https://github.com/sysbiochalmers/dlkcat

Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

bayesian deep-learning enzyme-constraints enzyme-turnover-number kcat kinetics

Last synced: 29 Jul 2025

https://github.com/reactionmechanismgenerator/reactionmechanismsimulator.jl

The amazing Reaction Mechanism Simulator for simulating large chemical kinetic mechanisms

chemistry kinetics reactions reactor simulator

Last synced: 21 Oct 2025

https://github.com/markovmodel/pyemma_tutorials

How to analyze molecular dynamics data with PyEMMA

analysis kinetics markov-model md-simulations molecular-dynamics pyemma tutorial

Last synced: 13 May 2025

https://github.com/sysbiochalmers/gecko

Toolbox for including enzyme constraints on a genome-scale model.

data-integration enzyme-constraints kinetics matlab proteomics systems-biology toolbox

Last synced: 24 Oct 2025

https://github.com/modenaxe/msk-STAPLE

STAPLE (Shared Tools for Automatic Personalised Lower Extremity modelling) consists of a collection of methods for generating skeletal models from three-dimensional bone geometries, usually segmented from medical images. The methods are currently being expanded to create complete musculoskeletal models.

biomechanics bone-geometries bone-morphological-analysis computational-biology computer-science kinematics kinetics lower-limb-models openscience science skeleton

Last synced: 08 Dec 2025

https://github.com/modenaxe/msk-staple

STAPLE (Shared Tools for Automatic Personalised Lower Extremity modelling) consists of a collection of methods for generating skeletal models from three-dimensional bone geometries, usually segmented from medical images. The methods are currently being expanded to create complete musculoskeletal models.

biomechanics bone-geometries bone-morphological-analysis computational-biology computer-science kinematics kinetics lower-limb-models openscience science skeleton

Last synced: 02 Aug 2025

https://github.com/deng-mit/reactorch

A Differentiable Reacting Flow Simulation Package in PyTorch

chemical-kinetics combustion fluid-dynamics kinetics pytorch scientific-machine-learning

Last synced: 03 Mar 2026

https://github.com/dpploy/chen-3170

Computational Methods in Chemical Engineering (UMass Lowell, Spring 2024); Prof. Valmor F. de Almeida.

binder chemical-reaction-engineering filtering fitting-algorithm fourier-analysis jupyter-notebook kinetics latex least-squares linear-algebra matplotlib nbviewer nonlinear-dynamics nuclear-reactor plotly python-3 scipy stoichiometry teaching wavelet-analysis

Last synced: 22 Mar 2025

https://github.com/reactionmechanismgenerator/autotst

AutoTST: A framework to perform automated transition state theory calculations

chemistry combustion kinetics quantum-chemistry

Last synced: 27 Jan 2026

https://github.com/ginkgobioworks/geckopy

Enzyme-constrained genome-scale models in python

data-integration enzyme-constraints kinetics omics proteomics systems-biology thermodynamics

Last synced: 25 Oct 2025

https://github.com/lukereichold/visualactionkit

Human action classification for video, offline and natively on iOS via Core ML

3d-cnn avkit convolutional-neural-network coreml ios kinetics neural-network swift swiftui video-classification video-processing vision

Last synced: 18 Feb 2026

https://github.com/acuoci/opensmoke

Numerical framework for reacting systems with detailed kinetic mechanisms

combustion flames ideal-reactors kinetics pyrolysis reactions

Last synced: 04 Feb 2026

https://github.com/quva-lab/sigma

eccv2024 kinetics representation-learning self-supervised-learning something-something-v2 video

Last synced: 09 Sep 2025

https://github.com/openscilab/drux

Drug Release Analysis Framework

drug-delivery drug-discovery drug-release kinetics simulation simulator

Last synced: 20 Sep 2025

https://github.com/sysbiochalmers/ecmodels

A container for all enzyme constrained models created by GECKO.

genome-scale-models kinetics metabolism systems-biology

Last synced: 29 Jul 2025

https://github.com/hugomvale/pre-notebooks

Notebooks for Polymer Reaction Engineering lectures.

engineering kinetics lectures polymer reaction

Last synced: 29 Oct 2025

https://github.com/hanford/react-flick-list

react bindings for kinetic scrolling

flick-list inertia kinetics react scrolling

Last synced: 23 Aug 2025

https://github.com/bruscalia/styrene

A Python package for styrene reactor simulation

chemical-engineering kinetics reaction-engineering simulation

Last synced: 02 Apr 2026

https://github.com/kevinzakka/kinetics

Python script to mine the Kinetics dataset.

dataset deepmind kinetics python3

Last synced: 24 Mar 2025

https://github.com/bio-phys/kinetics-remd

Extracting kinetics from replica exchange molecular dynamics and related methods that produce discontinuous trajectories.

extracting-kinetics kinetics kinetics-remd md-simulations python remd-simulations science

Last synced: 16 Jan 2026

https://github.com/chicolucio/kinetics_generator

Generates chemical kinetics data.

chemical-kinetics chemistry kinetics python science scipy uncertainties

Last synced: 12 Apr 2025

https://github.com/becksteinlab/kda

Python package used for the analysis of biochemical kinetic diagrams.

graph kinetics python

Last synced: 23 Apr 2025

https://github.com/timvwese/networkjumpprocesses.jl

Julia package to facilitate the construction of JumpProblems on graphs.

discrete-event-simulation graph graphs julia julialang kinetics network networks stochastic-processes

Last synced: 03 Feb 2026

https://github.com/wigging/kinetic-schemes

Kinetic reaction schemes for biomass pyrolysis

biomass kinetics pyrolysis

Last synced: 18 Mar 2025

https://github.com/sysbiochalmers/enzymeconstrained_humanmodels

Collection of scripts for enhancing humanGEM based models with kinetic and proteomics constraints and specialized simulation utilities.

enzyme-constraints genome-scale-models kinetics proteomics-data-integration systems-biology

Last synced: 16 Aug 2025

https://github.com/the-modelling-club/matlab-scripts

This repository contains matlab scripts written by the members of The Modelling Club

engineering kinetics matlab reaction thermodynamics thermodynamics-models

Last synced: 13 Oct 2025

https://github.com/ismet55555/kinetic-shape-matlab-script

MATLAB script to generate 2D and 3D kinetic shapes

2d 3d dynamics kinetic-shape kinetics matlab rolling statics

Last synced: 08 Apr 2025

https://github.com/sinagilassi/pyreactlab

Analyze reactions and evaluate thermodynamic feasibility.

chemical-engineering equilibrium-constant kinetics reaction-analysis thermodynamic-analysis

Last synced: 15 May 2025

https://github.com/gemshub/xgems

This is a numerical solver of chemical equilibria for thermodynamic modelling, extended (relative to GEMS3K code) with new [C++ and Python APIs]

environmental equilibrium geochemical-modeling geochemistry gibbs-energy kinetics reactive-transport sorption thermodynamic

Last synced: 06 Mar 2026

https://github.com/chicolucio/reversiblefirstorder

Plots for reversible first order reactions

chemistry interactive-visualizations kinetics physical-chemistry python science

Last synced: 29 Apr 2026

https://github.com/esther-poniatowski/ubc-synapse

Modeling signal filtering in the synapse between Mossy Fibers and Unipolar Brush Cells

cerebellum diffusion filtering kinetics modeling-and-simulation signal-processing synapse

Last synced: 28 Oct 2025