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Projects in Awesome Lists tagged with kmer
A curated list of projects in awesome lists tagged with kmer .
https://github.com/jerryji1993/DNABERT
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
deep-learning dnabert-model genome gpu kmer kmer-format machine-learning natural-language-processing nlp sequence
Last synced: 08 Aug 2024
https://github.com/sourmash-bio/sourmash
Quickly search, compare, and analyze genomic and metagenomic data sets.
bioinformatics fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling
Last synced: 08 Aug 2024
https://github.com/KamilSJaron/smudgeplot
Inference of ploidy and heterozygosity structure using whole genome sequencing data
Last synced: 08 Aug 2024
https://github.com/shenwei356/kmcp
Accurate metagenomic profiling && Fast large-scale sequence/genome searching
bigsi cobs fracminhash kmer metagenomics scaled-minhash searching sketch sketching syncmers taxonomic-classification taxonomic-profiling virome
Last synced: 02 Aug 2024
https://github.com/mcveanlab/mccortex
De novo genome assembly and multisample variant calling
contigs cortex de-bruijn-graphs genome-analysis genome-assembly genome-graph genomics kmer variant-calling
Last synced: 08 Aug 2024
https://github.com/shenwei356/unikmer
A versatile toolkit for k-mers with taxonomic information
difference golang intersection k-mer kmer set unik union unique
Last synced: 02 Aug 2024