Projects in Awesome Lists tagged with linked-reads
A curated list of projects in awesome lists tagged with linked-reads .
https://github.com/parklab/xTea
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
illumina linked-reads mobile-element-insertion nanopore pacbio transposable-elements
Last synced: 14 Mar 2025
https://github.com/bcgsc/tigmint
⛓ Correct misassemblies using linked AND long reads
10xgenomics bioinformatics bioinformatics-tool genome-assembly genome-scaffolding linked-reads misassembly-correction
Last synced: 15 Apr 2025
https://github.com/bcgsc/physlr
:chains: Construct a Physical Map from Linked Reads
10xgenomics bioinformatics bioinformatics-tool genome-assembly genome-scaffolding linked-reads
Last synced: 07 May 2025
https://github.com/pdimens/harpy
Process haplotagging data, from raw sequences to phased haplotypes, batteries included.
bioinformatics haplotype linked-reads pipeline sequencing variant-calling
Last synced: 11 Apr 2025
https://github.com/bcgsc/chromeqc
ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
genome genome-sequencing linked-reads quality-control
Last synced: 22 Feb 2025
https://github.com/bioinfologics/Pseudoseq.jl
Fake genomes, fake sequencing, real insights.
dna-assembly dna-sequences dna-sequencing genome-assembly linked-reads long-reads paired-end simulation simulator
Last synced: 14 Mar 2025
https://github.com/morispi/LRez
Standalone tool and library allowing to work with barcoded linked-reads
10x 10x-genomics 10xgenomics barcode barcodes bioinformatics haplotagging index linked linked-reads reads stlfr tell-seq
Last synced: 14 Mar 2025
https://github.com/morispi/LEVIATHAN
Linked-reads based structural variant caller with barcode indexing
10xgenomics barcodes linked-reads structural-variation svs
Last synced: 14 Mar 2025
https://github.com/anne-gcd/MTG-Link
MTG-Link: Local assembly tool for linked-read data
assembly barcodes bioinformatics gapfilling linked-reads
Last synced: 14 Mar 2025
https://github.com/RolandFaure/QuickDeconvolution
A software providing reference-free barcode deconvolution for linked reads data
Last synced: 14 Mar 2025
https://github.com/sjackman/tigmint-data
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
10xgenomics bioinformatics bioinformatics-analysis genome-assembly genome-scaffolding linked-reads misassembly-correction
Last synced: 15 Mar 2025
https://github.com/sjackman/tigmint-paper
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
10xgenomics bioinformatics genome-assembly genome-scaffolding linked-reads manuscript misassembly-correction
Last synced: 15 Mar 2025
https://github.com/sjackman/tigmint-slides
Tigmint: Correct Misassemblies Using Linked Reads From Large Molecules
10x abyss assembly chromium genome gymnosperm linked-reads misassembly-correction mitochondrion scaffolding
Last synced: 15 Mar 2025