Projects in Awesome Lists tagged with local-assembly
A curated list of projects in awesome lists tagged with local-assembly .
https://github.com/nygenome/lancet
Microassembly based somatic variant caller for NGS data
cancer-genomics debruijn-graph indels local-assembly snvs somatic-mutations variant-callers
Last synced: 14 Mar 2025
https://github.com/brentp/indelope
find large indels (in the blind spot between GATK/freebayes and SV callers)
genome-assembly genomics k-mer-counting local-assembly nim-lang variant-calling vcf
Last synced: 11 Mar 2025
https://github.com/deepomicslab/SpecHLA
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
allelic-imbalance cancer genotype-frequency haplotype hla-sequence hla-typing human-leukocyte-antigens immunity local-assembly loh loss-of-heterozygosity nanopore pacbio-data phase reads-binning
Last synced: 14 Mar 2025
