Projects in Awesome Lists tagged with maximum-likelihood
A curated list of projects in awesome lists tagged with maximum-likelihood .
https://github.com/camdavidsonpilon/lifelines
Survival analysis in Python
cox-regression data-science maximum-likelihood python reliability-analysis statistics survival-analysis
Last synced: 03 Oct 2025
https://github.com/CamDavidsonPilon/lifelines
Survival analysis in Python
cox-regression data-science maximum-likelihood python reliability-analysis statistics survival-analysis
Last synced: 26 Mar 2025
https://github.com/camDavidsonPilon/lifelines
Survival analysis in Python
cox-regression data-science maximum-likelihood python reliability-analysis statistics survival-analysis
Last synced: 04 May 2025
https://github.com/amkozlov/raxml-ng
RAxML Next Generation: faster, easier-to-use and more flexible
bioinformatics maximum-likelihood mpi phylogenetics pthreads
Last synced: 19 Feb 2026
https://github.com/stan-dev/cmdstanr
CmdStanR: the R interface to CmdStan
bayes bayesian markov-chain-monte-carlo maximum-likelihood mcmc r-package stan variational-inference
Last synced: 07 Apr 2025
https://github.com/cogent3/cogent3
Comparative Genomics Toolkit 3
bioinformatics biological-sequence-analysis biology biopython data-science evolution genomics markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics
Last synced: 20 Apr 2026
https://github.com/jamiemcg/busco_phylogenomics
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
bayesian bioinformatics evolution genomics maximum-likelihood phylogenetics phylogenomics
Last synced: 10 Apr 2025
https://github.com/vinuesa/get_phylomarkers
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
bash clock-hypothesis codon-alignment core-genome genomics markers maximum-likelihood microbiology orthologues perl phylogenetic-trees phylogenetics phylogenomics phylogenomics-pipeline pipeline population-genetics r recombination species-delimitation species-trees
Last synced: 11 Feb 2026
https://github.com/jabbring/dynamic-discrete-choice
Matlab package for learning to specify, compute, and estimate dynamic discrete choice models
ddc dynamic-discrete-choice estimation exercises firm-dynamics matlab maximum-likelihood mpec nested-fixed-point-method nfxp
Last synced: 11 Oct 2025
https://github.com/pachadotdev/gravity
R package that provides estimation methods for Gravity Models
bvu bvw ddm econometrics glm gpml gravity international-trade lm maximum-likelihood nbpml nls ols ppml r sils tobit trade
Last synced: 13 Jul 2025
https://github.com/viodotcom/ppca_rs
Python+Rust implementation of the Probabilistic Principal Component Analysis model
data-science dimensionality-reduction em-algorithm linear-algebra machine-learning machine-learning-algorithms maximum-likelihood maximum-likelihood-estimation missing-data missing-values pca pca-analysis python rust
Last synced: 11 Apr 2025
https://github.com/evolbioinfo/pastml
Ancestral character reconstruction and visualisation for rooted phylogenetic trees
ancestral-character-reconstruction maximum-likelihood parsimony phylogenetics phylogeography visualisation
Last synced: 21 Oct 2025
https://github.com/4ment/physher
A multi-algorithmic framework for phylogenetic inference
bayesian-inference c genetic-algorithm maximum-likelihood mcmc phylogenetics variational-inference
Last synced: 21 Aug 2025
https://github.com/jkirkby3/BsplineDensity
B-Spline Density Estimation Library - nonparametric density estimation using B-Spline density estimator from univariate sample.
basis bsplines density estimation kde kernel kernel-density kernel-density-estimation maximum-likelihood maximum-likelihood-estimation nonparametric nonparametric-regression nonparametric-statistics spline-fit statistics
Last synced: 10 Mar 2025
https://github.com/markjolah/mappel
Maximum a posteriori Point Emitter Localization -- High-performance, parallel, robust, cross-platform localization for EMCCD and SCMOS microscopy.
flouresence-microscopy matlab maximum-likelihood openmp python
Last synced: 02 Sep 2025
https://github.com/jabbring/mht-likelihood
Replication package for Abbring and Salimans (2021), "The Likelihood of Mixed Hitting Times," with MATLAB code for estimating mixed hitting-time models
duration duration-analysis estimation first-passage-times hitting-times identification likelihood matlab maximum-likelihood mixed-hitting-time-model mixture strike-durations survival survival-analysis
Last synced: 13 Oct 2025
https://github.com/jb262/MaximumLikelihoodGammaDist
A basic implementation for the maximum likelihood estimators of a gamma distribution's parameters.
excel gamma-distribution inductive inductive-statistics maximum-likelihood maximum-likelihood-estimation statistics vba
Last synced: 30 Jul 2025
https://github.com/egarpor/sdetorus
Statistical tools for toroidal diffusions. Software companion for "Langevin diffusions on the torus: estimation and applications"
circular-statistics inference maximum-likelihood r reproducible-research sde statistics toroidal-data
Last synced: 26 Mar 2025
https://github.com/zang-langyan/autolik
Provide the automatic differentiation for Likelihood maximization routine
automatic-differentiation distributions loglikelihood maximum-likelihood numpy python
Last synced: 25 Jan 2026
https://github.com/jamesjcai/mbetoolbox
MBEToolbox: Matlab toolbox for molecular evolution
matlab maximum-likelihood molecular-evolution phylip
Last synced: 02 Jul 2025
https://github.com/pharo-ai/gaussian-mixture-model
Gaussian Mixture Model (GMM) is an iterative algorithm for fitting the data with multiple normal distributions (gaussians). Can be used for classification
classification gaussian-mixture-models machine-learning maximum-likelihood pharo statistical-learning statistics
Last synced: 03 Jul 2025
https://github.com/m-clark/mixed-models-estimation
Raw files for a document demonstrating some by hand estimation of mixed models.
maximum-likelihood mixed-models mixed-models-estimation
Last synced: 23 Mar 2025
https://github.com/bcbi/maximumlikelihoodproblems.jl
Formulate likelihood problems and solve them with maximum likelihood estimation (MLE)
likelihood likelihood-functions log-likelihood log-likelihood-functions maximum-likelihood maximum-likelihood-estimation maximum-likelihood-problems statistical-inference statistics
Last synced: 19 Mar 2026
https://github.com/cmzmasek/vfam_trees
Automated maximum-likelihood phylogeny pipeline for viral families. Discovers species via NCBI Taxonomy, downloads from GenBank, aligns with MAFFT, builds trees with FastTree (broad) and IQ-TREE (refined), and annotates internal nodes by LCA. Supports multi-marker concatenation for large DNA virus families.
bioinformatics computational-biology dna-virus evolution iqtree mafft maximum-likelihood mmseqs multi-marker-concatenation phylogenetics phyloxml pipeline rna-virus taxonomy trimal viral-evolution virology
Last synced: 24 May 2026
https://github.com/queelius/compositional.mle
Composable MLE solvers: a DSL for maximum likelihood estimation where solvers are first-class functions that combine via chaining, racing, and restarts
composable dsl estimation maximum-likelihood mle mle-estimation numerical-methods optimization r-package statistics
Last synced: 04 Mar 2026
https://github.com/egarpor/data-langevintorus
Data for the reproducibility of García-Portugués et al. (2019)
circular-statistics inference maximum-likelihood r reproducible-research sde statistics toroidal-data
Last synced: 15 May 2026