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Projects in Awesome Lists tagged with methodology

A curated list of projects in awesome lists tagged with methodology .

https://github.com/HughYau/qiushi-skill

求是Skill——从经典唯物辩证法与实践哲学中提炼出一条总原则和九大方法论工具武装AI大脑。Qiushi-Skill: Build agents that investigate first, focus on the main contradiction, validate in practice, and keep pushing until the work is actually done.

ai-agents methodology skills workflow

Last synced: 13 Jun 2026

https://github.com/stas00/the-art-of-debugging

The Art of Debugging

c debugging gdb methodology python

Last synced: 12 Apr 2025

https://github.com/InnerSourceCommons/InnerSourcePatterns

These patterns document how to apply open source principles and practices for software development within the confines of an organization - aka InnerSource.

culture hacktoberfest innersource innersource-patterns markdown methodology open-source patterns software-development working-group

Last synced: 16 May 2026

https://github.com/dsopas/MindAPI

Organize your API security assessment by using MindAPI. It's free and open for community collaboration.

api-security hacking methodology mindapi mindmap

Last synced: 11 Jul 2025

https://github.com/promptdriven/pdd

Prompt Driven Development (PDD): The Last Programming Language™. Prompt files are source; code is generated output.

ai cli code developer-tools development methodology prompt prompt-engineering prompt-toolkit prompts prompts-template

Last synced: 26 Jun 2026

https://github.com/dsopas/assessment-mindset

Security Mindmap that could be useful for the infosec community when doing pentest, bug bounty or red-team assessments.

bugbounty infosec methodology mindmap

Last synced: 02 Apr 2025

https://github.com/idov31/functionstomping

Shellcode injection technique. Given as C++ header, standalone Rust program or library.

attack cpp cyber cybersecurity injection methodology rust shellcode shellcode-injection windows

Last synced: 04 Apr 2025

https://github.com/Idov31/FunctionStomping

Shellcode injection technique. Given as C++ header, standalone Rust program or library.

attack cpp cyber cybersecurity injection methodology rust shellcode shellcode-injection windows

Last synced: 02 Apr 2025

https://github.com/the-osint-toolbox/email-username-osint

Some great resources to gather OSINT on Email Addresses & Usernames. Alternatively check the exposure of your Email & Username.

avatar email email-validation email-verification footprint ghunt holehe information-gathering methodology name osint privacy sherlock username username-checker

Last synced: 24 Feb 2026

https://github.com/src-d/guide

Aiming to be a fully transparent company. All information about source{d} and what it's like to work here.

culture documentation methodology

Last synced: 05 May 2025

https://github.com/OSVVM/OSVVM

OSVVM Utility Library: AlertLogPkg, CoveragePkg, RandomPkg, ScoreboardGenericPkg, MemoryPkg, TbUtilPkg, TranscriptPkg, ...

alerts constrained-random coverage coverage-bins memory memory-model methodology osvvm osvvm-blog scoreboard simulation testbench transaction-interfaces verification verification-methodologies vhdl

Last synced: 12 May 2025

https://github.com/greenelab/pancancer

Building classifiers using cancer transcriptomes across 33 different cancer-types

analysis cancer classifier gene-expression machine-learning methodology pancancer tcga tool transcriptome

Last synced: 05 May 2025

https://github.com/wso2/reference-methodology

Integration projects today follow a time-consuming waterfall model, ill-suited to solving complex integration challenges. In response, WSO2 has developed organizational, project management, and technical expertise to help IT organizations transform integration projects to a more efficient and scalable continuous agile approach.

agility integration methodology programmability scrum

Last synced: 10 Feb 2026

https://github.com/greenelab/continuous_analysis

Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.

continuous-integration methodology open-science reproducibility supplement

Last synced: 05 May 2025

https://github.com/greenelab/adage

Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · 2016

autoencoders data dataset denoising-autoencoders gene-expression machine-learning manuscript methodology neural-networks paper pseudomonas-aeruginosa research supplement

Last synced: 07 Mar 2026

https://github.com/humansys/raise

RaiSE Framework — Reliable AI-assisted Software Engineering. Lean methodology + deterministic toolkit for building production software with AI.

ai cli developer-tools lean methodology python software-engineering

Last synced: 07 Apr 2026

https://github.com/greenelab/snorkeling

Extracting biomedical relationships from literature with Snorkel 🏊

analysis dataset hetnet machine-learning methodology nlp script snorkel text-mining tool workflow

Last synced: 05 May 2025

https://github.com/turborium/gdd

✅ G-Code Driven Development ✅

architecture best-practices gdd gdd-methodology methodology

Last synced: 30 Jan 2026

https://github.com/wemake-services/meta

Home of Repeatable Software Development Process

business business-process management methodology rspd software-development

Last synced: 28 Feb 2026

https://github.com/bybren-llc/safe-agentic-workflow

Production-validated SAFe multi-agent development methodology with Claude Code. Treat AI agents as specialized team members (11 roles: BSA, Architect, QAS, etc). Complete whitepaper + working template.

agile-methodology ai-agents ai-assisted-development claude-code commands dark-factory developer-tools evidence-based-development harness hooks methodology multi-agent safe-framework scaled-agile-framework skills software-development software-engineering task-orchestration whitepaper

Last synced: 01 Apr 2026

https://github.com/greenelab/multi-plier

An unsupervised transfer learning approach for rare disease transcriptomics

analysis bioinformatics-analysis dataset gene-expression-signatures machine-learning methodology multiplier plier rare-diseases

Last synced: 16 Feb 2026

https://github.com/greenelab/daps

Denoising Autoencoders for Phenotype Stratification

analysis autoencoders machine-learning methodology neural-networks

Last synced: 20 Feb 2026

https://github.com/cuth/title-css

A CSS organization methodology

css methodology

Last synced: 23 Mar 2025

https://github.com/greenelab/pdx_exomeseq

Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models

analysis cancer methodology mutation notebook pancreatic-cancer pdx pipeline sequencing wes

Last synced: 31 Jan 2026

https://github.com/mrvcoder/bug-hunting-methodologies

this repo contains some public methodologies which I found from internet (google,telegram,discord,writeups etc..)

bounty bug bugbounty bugbounty-methodology hack hunt information-gathering methodology osint recon reconnaissance

Last synced: 02 Feb 2026

https://github.com/nepster-web/upcss

Методология для модульной организации CSS.

css html-css methodology scss

Last synced: 16 Mar 2026

https://github.com/gigsmart/haiku-method

H·AI·K·U (Human + AI Knowledge Unification) — a universal lifecycle framework for structured AI-assisted work. Plugin, paper, and website.

ai ai-agents ai-dlc claude development-lifecycle methodology

Last synced: 11 May 2026

https://github.com/engineeringsoftware/inlinetest

Tests that check correctness of a single statement

inline methodology single statement testing tests

Last synced: 19 Jul 2025

https://github.com/heckerbirb/infosec-manual

Open-source methodology on pentesting and risk mitigation

hacktoberfest infosec methodology pentesting risk-mitigation

Last synced: 16 Jan 2026

https://github.com/xop/css-codeguide

Documentation for coding and maintaining the most transparent CSS

bem css documentation methodology

Last synced: 17 Jun 2025

https://github.com/greenelab/hgsc_subtypes

Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four

cancer gene-expression machine-learning methodology ovarian-cancer subtype

Last synced: 05 May 2025

https://github.com/greenelab/nf1_inactivation

Using Machine Learning to Identify Glioblastoma patients with NF1 inactivation

analysis cancer gene-expression machine-learning methodology

Last synced: 04 Jul 2025

https://github.com/frmoretto/stream-coding

Stop "vibe coding" and start Stream Coding, the 10-20x velocity methodology for AI-accelerated development. Includes the official SKILL.md for Claude/Cursor/Windsurf and the complete Manifesto.

ai-accelerated ai-coding ai-development claude claude-code context-engineering cursor developer-tools documentation-first llm methodology sdd software-engineering specification-driven-development technical-debt velocity

Last synced: 02 Mar 2026

https://github.com/thebushidocollective/haiku-method

AI-DLC 2026 Methodology - Iterative AI-driven development with hat-based workflows

ai ai-agents ai-dlc claude development-lifecycle methodology

Last synced: 08 Apr 2026

https://github.com/greenelab/tad_pathways_pipeline

Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs

analysis candidate-genes gwas methodology pathways tad tads workflow

Last synced: 05 May 2025

https://github.com/morrislu-taipei/genai-consulting-methodology-toolkit

企業 GenAI 轉型成熟度診斷與導入方法論工具包 — L1-L5 成熟度模型 + 八階段顧問結構。Enterprise GenAI transformation maturity assessment & implementation methodology toolkit (L1-L5 + eight-stage consulting). Apache 2.0.

agentic-ai ai-agents ai-consulting ai-governance ai-transformation bilingual claude-code consulting-toolkit enterprise-ai llm maturity-model methodology n8n openwebui taiwan

Last synced: 20 May 2026

https://github.com/Olliang/Statistical-Similarity-Measurement

A methodology designed to validate the statistical similarity of synthetic data generated by GAN models. The metrics contain Auto-encoder, PCA, t-SNE, KL-divergence, Clustering, and Cosine Similarity.

methodology similarity-measures similarity-metric synthetic-data

Last synced: 11 May 2025

https://github.com/moimikey/issues-label-standard

🐝 An unofficial standardization for GitHub labels, influenced by larger issue tracking softwares.

github issues labels methodology

Last synced: 02 May 2025

https://github.com/orico/flexeegile

Extending Agile For AI & Data Teams

agile ai data data-science flexeegile methodology

Last synced: 08 Jan 2026

https://github.com/frmoretto/clarity-gate

Stop LLMs from hallucinating your guesses as facts. Clarity Gate is a verification protocol for your documents that are going to be provided to LLMs or RAG systems. Place automatically the missing uncertainty markers to avoid confident hallucinations. HITL for non-directly verifiable claims.

ai ai-safety clarity-gate claude context-engineering documentation epistemic-quality hallucination llm methodology pre-ingestion prompt-engineering rag stream-coding verification

Last synced: 02 Feb 2026

https://github.com/thinh-vu/obsidian_flow_public

Vault mẫu cho phương pháp ghi chú FLOW trong Obsidian

methodology note-making note-taking obsidian obsidian-flow pkm

Last synced: 16 Jun 2025

https://github.com/yungvldai/fbem

Functional BEM packages 🧱

bem css functional loader methodology typescript

Last synced: 08 Sep 2025

https://github.com/ph-7/learning-fast-for-devs

🌟 The "Learning F.A.S.T. for Devs™" A methodology based on the 80/20 rule and the Deep Work, that gives the perfect toolkit for developers to learn new skills or a programming language 3 times more efficient and faster, allowing them to start straight away, in a matter of days, the development of a new complex, modern and scalable software 🚀

deep-work dev-tips learn learn-fast learn-programming learn-to-code learning methodology

Last synced: 01 Feb 2026

https://github.com/adulau/pmf

Programming Methodology Framework - PMF methodology

methodology pmf-methodology programming-motherfucker

Last synced: 14 Mar 2026

https://github.com/greenelab/simulate-expression-compendia

Evaluating the effect of technical sources of variability in large-scale gene expression compendia.

analysis dataset methodology software supplement tool

Last synced: 05 May 2025

https://github.com/tadatuta/postcss-css-to-bem-css

postcss plugin to convert CSS to rebem-css

bem convention css methodology naming postcss

Last synced: 17 Jun 2025

https://github.com/jason-vaughan/tangleclaw

AI coding session orchestrator — persistent tmux sessions, multi-engine management, methodology enforcement, and mobile access for Claude Code, Codex, Gemini CLI, Aider, and OpenClaw

ai ai-agent ai-coding aider claude-code codex developer-tools gemini-cli macos methodology mobile nodejs openclaw pwa self-hosted session-management terminal tmux zero-dependencies

Last synced: 02 Jun 2026

https://github.com/greenelab/pathcore-t

Methods to build a network of pathway co-occurrence relationships out of expression signatures extracted from transcriptomic compendia.

analysis gene-expression methodology supplement

Last synced: 05 May 2025

https://github.com/greenelab/continuous_analysis_phylo

A simple phylogenetic tree building example of Continuous Analysis

analysis continuous-integration example methodology workflow

Last synced: 12 Jun 2025

https://github.com/l0wk3y-iaan/hunting-with-l0wk3y

This repository documents my path from cybersecurity enthusiast to a skilled bug bounty hunter. Here, I share the tools, resources, techniques, and real-world insights I've gathered along the way, aimed at uncovering vulnerabilities and improving application security.

bounty bug-bounty bugbounty cheatsheet enumeration hacking methodology penetration-testing pentest redteam security vulnerability web-application web-penetration-testing

Last synced: 13 Sep 2025

https://github.com/outboxcraft/bol

Base Object Layer - Design Methodology

css design html methodology

Last synced: 20 Apr 2026

https://github.com/greenelab/multiple-myeloma-classifier

Multi-class KRAS/NRAS Classifier for Multiple Myeloma

analysis cancer dataset gene-expression machine-learning methodology

Last synced: 05 Feb 2026

https://github.com/sargamdesign/sargam-design-methodology

Design methodology based on the aesthetics of Indian Classical Music.

design-system methodology

Last synced: 01 Mar 2026

https://github.com/greenelab/greedy-geneset-selection

Source code associated with "Leveraging global gene expression patterns to predict expression of unmeasured genes"

cancer gene-expression methodology

Last synced: 17 Jun 2025

https://github.com/loneicewolf/soc-200-lightpreparation

My (currently only in theory) light preparation for the SOC-200 course (will probably take it **sometime** )

cyber-threat-intelligence methodology offsec pentesting soc200-osda

Last synced: 19 Mar 2026

https://github.com/superfly-css/superfly-css

CSS components, utilities, their foundation, and corresponding structural and build methodology

consistency css-components css-modules gulp methodology

Last synced: 02 May 2026

https://github.com/winchxyz/idea-to-build

Turn a raw idea into a plan you can build. A multi-agent brainstorming methodology — isolated critique, fact-checking, and a build handoff to Claude Code.

ai-agents brainstorming claude claude-code cowork-plugin mcp methodology multi-agent open-source prompt-engineering

Last synced: 05 Jun 2026

https://github.com/unicef/holistic-assessments-for-ict4d

Guidance that provides a methodology for ICT4D practitioners to assess software from the security an privacy point of view.

assessment audit digital-impact evaluation guidance ict4d methodology security t4d technology-for-development unicef

Last synced: 03 Mar 2026

https://github.com/juan294/cc-rpi

Blueprint repository for Claude Code projects — RPI methodology, known agent error patterns, operational rules, and project templates

ai-agents best-practices claude-code developer-tools error-patterns llm methodology prompt-engineering

Last synced: 02 May 2026

https://github.com/greenelab/continuous_analysis_rnaseq

Example of how continuous analysis can be used for RNA-Seq differential expression.

analysis continuous-integration methodology

Last synced: 05 May 2025

https://github.com/harwinborger/itcss

An ITCSS boilerplate written in SASS/SCSS

boilerplate css itcss methodology sass scss

Last synced: 07 Sep 2025

https://github.com/willemsleegers/how-to-science

A Quarto book with my conclusions regarding various methodological and statistical issues.

methodology statistics

Last synced: 23 Feb 2026

https://github.com/wakematta/sefart

Web implementation of Sefart methodology (bitmaps of Hebrew literature)

binary bitmaps decoding encrypt encryptography hebrew hebrew-bible methodology sefart sefart-methodology

Last synced: 12 Mar 2025

https://github.com/natserract/cdd-react

Component-Driven Development (CDD) in React. Think scalable, robust, good performance and type safe components

cdd methodology react

Last synced: 16 Apr 2026

https://github.com/pb3ck/playbook

A phase-driven walkthrough of offensive security — engagement-aware, ATT&CK-mapped, with an auto-derived attack graph and BYOK CVE enrichment. Static export, no backend.

attack-graph byok cve methodology mitre-attack nextjs offensive-security penetration-testing pentest react security-tools tailwindcss typescript vulnerability-management

Last synced: 04 May 2026

https://github.com/dewtech-technologies/dare-method

DARE is a structured methodology for AI-assisted software development. Four phases (Design → Architect → Review → Execute) keep humans in control while AI handles execution. Built for Cursor IDE, language-agnostic, battle-tested in production.

agentic-engineering ai-agents ai-assisted-development ai-coding anthropic claude claude-code code-quality context-engineering cursor-ide dare-method developer-experience human-in-the-loop methodology prompt-engineering software-engineering

Last synced: 08 Jun 2026

https://github.com/greenelab/brd-net

Transfer learning for uncovering the biology underlying rare disease

analysis gene-expression methodology rare-disease tool

Last synced: 09 May 2026

https://github.com/greenelab/tad_pathways

DEPRECATED: Integrating topologically associating domains (TADs) to prioritize GWAS signal

analysis deprecated methodology pathway

Last synced: 31 May 2026

https://github.com/medjb10/nerdevana--e-commerce-website

An e-commerce platform for purchasing customized posters, developed collaboratively to explore and implement classic development methodologies. The project features a Symfony-powered backend, an Angular-based frontend, and a MySQL database.

angular methodology symfony teamwork

Last synced: 20 Apr 2026

https://github.com/gildas/gitflow-pr-sandbox

Sandbox to illustrate how to use Pull Requests with git flow

git-flow methodology pull-request

Last synced: 21 Mar 2025

https://github.com/jiachengwang-punch/predictive-analytics-skill

A reusable, multi-model, language-adaptive methodology for end-to-end machine learning analysis of tabular data.

claude-skill codex-skill data-analysis data-science deepseek feature-engineering lightgbm llm machine-learning methodology prompt-engineering tabular-data

Last synced: 30 May 2026

https://github.com/greenelab/netscape

Exploring the network/pathway regularization landscape for gene expression data

analysis gene-expression methodology networks pathways tool

Last synced: 09 May 2026

https://github.com/ari-dasci/od-moodle-usability-assessment

Data and template instruments to apply the Moodle Usability Assessment Methodology using the Universal Design for Learning perspective

methodology moodle testing usability

Last synced: 15 Feb 2026

https://github.com/crisnguyendev/miu-cs425-swe

Repository for assignments covering software development methodologies, UML modeling, and project-based learning to design robust and scalable systems.

agile assignment domain-driven-design methodology rational-unified-process software-development software-engineering testing

Last synced: 10 Jun 2025

https://github.com/ferenci-tamas/orvosi-megismeres-modszertan

Mind érdeklődőknek, mind orvosoknak, egészségügyi szakdolgozóknak szóló összefoglaló, mely igyekszik közérthetően bemutatni az empirikus orvosi kutatások módszertani alapjait, hangsúlyosan kitérve a félreértésekre és félrevezetésekre is, hogy ez alapján könnyebb legyen az ilyen vizsgálatokat értelmezni, értékelni és kritikusan értékelni.

medical methodology

Last synced: 02 Jun 2026

https://github.com/roymcfarland/agent_handoff_guide

A single-page live reference guide for an AI agent handoff workflow, including the document schema, the Builder and Closeout prompts, and best practices to prevent drift and context rot. Designed in a graph-paper aesthetic with copy-to-clipboard prompt blocks

agent-handoff ai-agent-framework ai-coding-agents developer-tools methodology open-source prompt-engineering prompt-library

Last synced: 11 Jun 2026

https://github.com/suahjl/vemethod-simulation-frictions

This repository contains files required to replicate the study "A Simulation Assessment of Vaccine Effectiveness Estimation Bias with Time-Varying Vaccine Coverage, and Heterogeneous Testing and Baseline Attack Rates" by Jing Lian Suah, Naor Bar-Zeev and Maria Deloria Knoll. Latest preprint can be found here at https://doi.org/10.1101/2022.08.25.22279235.

epidemiology methodology vaccine-effectiveness

Last synced: 17 Jan 2026

https://github.com/brlin-tw/hello-c-world

An example C software project to experiment coding methodology

c-programming experminental learning methodology tutorial

Last synced: 15 Mar 2025

https://github.com/ericbrasiln/hemdig-framework

HEMDIG(pt) framework: Métodos, ferramentas e hemerotecas digitais em português. Pesquisa de pós-doutorado.

digital-history digital-humanities methodology newspaper ocr

Last synced: 07 Apr 2026