Projects in Awesome Lists tagged with methylation
A curated list of projects in awesome lists tagged with methylation .
https://github.com/jts/nanopolish
Signal-level algorithms for MinION data
bioinformatics c-plus-plus epigenetics genome-assembly methylation science
Last synced: 06 May 2025
https://github.com/FelixKrueger/Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
bioinformatics dna methylation
Last synced: 30 Mar 2025
https://github.com/nanoporetech/modkit
A bioinformatics tool for working with modified bases
methylation modified-bases nanopore
Last synced: 05 Apr 2025
https://github.com/nanoporetech/remora
Methylation/modified base calling separated from basecalling.
basecalling methylation nanopore
Last synced: 06 Apr 2025
https://github.com/cangermueller/deepcpg
Deep neural networks for predicting CpG methylation
deep-neural-networks deeplearning epigenetics methylation single-cell
Last synced: 09 Apr 2025
https://github.com/bioinfomaticsCSU/deepsignal
Detecting methylation using signal-level features from Nanopore sequencing reads
bioinformatics epigenetics methylation nanopore-sequencing tensorflow
Last synced: 06 May 2025
https://github.com/mehelmy/princess
long-reads methylation phasing single-nucleotide-variation structural-variation
Last synced: 08 Apr 2025
https://github.com/jetbrains-research/bioinf-commons
Bioinformatics library in Kotlin
2bit bam bed bioinformatics cancellable chip-seq dataframe dataset dna-sequence fasta fastq hmm hypothesis-testing kotlin methylation mixture progress sampling
Last synced: 20 Nov 2024
https://github.com/andreaskapou/Melissa
Bayesian Clustering and Imputation of Single Cell Methylomes
bayesian-inference clustering imputation methylation variational-inference
Last synced: 09 Apr 2025
https://github.com/lkremer/scbs
Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSCAn
dna-methylation dna-methylation-data methylation single-cell single-cell-methylation single-cell-rna-seq
Last synced: 09 May 2025
https://github.com/dohlee/snakemake-bismark-methyldackel
Bismark-MethylDackel DNA methylation quantification pipeline in snakemake.
bioinformatics methylation pipeline reproducible-research reproducible-science snakemake snakemake-pipelines
Last synced: 05 May 2025
https://github.com/andrewdavidsmith/transferase
The transferase system for retrieving methylome data from methbase
bisulfite bisulfite-sequencing dna-methylation epigenetics epigenomics methyl-seq methylation methylation-analysis methylome wgbs
Last synced: 06 Apr 2025
https://xwanglabthu.github.io/ARIC/
Accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data
deconvolution methylation rna-seq
Last synced: 20 Apr 2025
https://github.com/dohlee/snakemake-bismark-methyldackel-sra
Process SRA bisulfite sequencing data easily with Bismark-MethylDackel pipeline.
bioinformatics bismark methylation pipeline snakemake
Last synced: 27 Feb 2025
https://github.com/andrewdavidsmith/mxe
Methylome transfer engine (mxe)
bisulfite bisulfite-sequencing dna-methylation epigenetics epigenomics methyl-seq methylation methylation-analysis methylome wgbs
Last synced: 29 Nov 2024
https://github.com/dcolinmorgan/mili_benchmark
mix of python, bash and R functions, scripts and notebooks to benchmark the use of methylation as proxy to infer TF binding
methylation motif open-access-data tf-binding wgbs
Last synced: 05 Mar 2025
