Projects in Awesome Lists tagged with microbial-genomics
A curated list of projects in awesome lists tagged with microbial-genomics .
https://github.com/moshi4/pycirclize
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
bioinformatics chord-diagram circos comparative-genomics data-visualization dataviz genomics genomics-visualization matplotlib microbial-genomics phylogenetic-trees python radar-chart visualization
Last synced: 14 May 2025
https://github.com/oschwengers/bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
annotation bacteria bacterial-genomes bioinformatics genome-annotation mag metagenome-assembled-genomes microbial-genomics plasmids
Last synced: 14 May 2025
https://github.com/moshi4/pygenomeviz
A genome visualization python package for comparative genomics
bioinformatics comparative-genomics genbank genomics genomics-visualization gff gff3 matplotlib microbial-genomics microbiology python synteny visualization
Last synced: 15 May 2025
https://github.com/moshi4/aniclustermap
A tool for drawing ANI clustermap between all-vs-all microbial genomes
bioinformatics comparative-genomics genomics microbial-genomics phylogenetics phylogenomics python taxonomy visualization
Last synced: 07 May 2025
https://github.com/moshi4/cogclassifier
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
bioinformatics cog comparative-genomics functional-analysis functional-annotation genome-analysis genomics microbial-genomics protein python visualization
Last synced: 12 May 2025
https://github.com/aleimba/bac-genomics-scripts
Collection of scripts for bacterial genomics
annotation bioinformatics bioperl blast computational-biology genomics microbial-genomics microbiology mlst ngs opensource perl science scripts-collection sequencing unix
Last synced: 02 Apr 2025
https://github.com/tseemann/seeka
Get microbial sequence data easier and faster
downloader genomic-data life-changing-magic microbial-genomics
Last synced: 12 Apr 2025
https://github.com/moshi4/gbkviz
Easy-to-use web application for visualization and comparison of genomes in Genbank file
bioinformatics biopython comparative-genomics genbank genomics genomics-visualization microbial-genomics python streamlit visualization webapp
Last synced: 21 Jan 2025
https://github.com/mbhall88/nanovarbench
Evaluating Nanopore-based bacterial variant calling
bacteria benchmark bioinformatics illumina microbial-genomics nanopore variant-calling
Last synced: 11 Apr 2025
https://github.com/cumbof/metasbt
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
bioinformatics genomes metagenome-assembled-genomes metagenomics microbial-genomics sequence-bloom-trees
Last synced: 14 Apr 2025
https://github.com/moshi4/pybarrnap
Python implementation of barrnap (Bacterial ribosomal RNA predictor)
bioinformatics genome-annotation genomics microbial-genomics microbiology python rna
Last synced: 21 Apr 2025
https://github.com/biosustain/gnomic
A grammar for describing microbial genotypes and phenotypes
bioinformatics biology microbial-genomics python
Last synced: 12 Apr 2025
https://github.com/cmorganl/MICB405-Metagenomics
A metagenome annotation workflow for UBC's Microbiology 405 course, Bioinformatics
bioinformatics metagenomics microbial-genomics
Last synced: 06 May 2025
https://github.com/dfornika/core-typer
A Core Genome MLST (cgMLST) Typing Tool
core-genome microbial-genomics sequence-typing
Last synced: 18 Mar 2025
https://github.com/dfornika/simulate-genomes
Simulate genomic variation, based on input reference genomes
bioinformatics-pipeline data-simulation microbial-genomics
Last synced: 18 Mar 2025
https://github.com/biosustain/co
Make mutated copies of DNA components in BioPython
biopython genomics microbial-genomics python
Last synced: 04 Mar 2025
https://github.com/sciencegenome/bacdive-metanalyzer
rust bacdive meta-analyzer microbial sequence informatics
bioinformatics dsmz genome-analysis microbial-genomics microbial-informatics microbial-source-tracking
Last synced: 18 Mar 2025
https://github.com/ibchgenomic/bacdive
bacdive microbial genotypes genomeinformatics
bacdive bioinformatics dsmz metagenomes microbial-genomes microbial-genomics webpack
Last synced: 18 Mar 2025
https://github.com/sciencegenome/bacdive
rust bacdive for microbial genotypes
bacdive bioinformatics dsmz metagenomes microbial-genomes microbial-genomics webpack
Last synced: 24 Jan 2025
https://github.com/dfornika/simulate-outbreak-dataset
Simulate a microbial pathogen outbreak dataset for use in variant-calling validations
Last synced: 18 Mar 2025