Projects in Awesome Lists tagged with mirna
A curated list of projects in awesome lists tagged with mirna .
https://github.com/lpantano/seqcluster
small RNA analysis from NGS data
mirna report sequencing smallrna trna
Last synced: 19 Mar 2025
https://github.com/dmnfarrell/smallrnaseq
small rna-seq analysis package
bioinformatics genomics mirna python rna-seq sequencing smallrna
Last synced: 15 Apr 2025
https://github.com/altaschen/mirtards
miRTarDS is a microRNA target interaction database, including 1,220,904 MTIs from miRTarbase, miRDB, miRWalk, involving 6,085 genes and 1,261 pre-miRNAs. The MTIs prediction achieved an F1 score of 0.889 in accurately distinguishing protein-level experimentally (western blot & reporter assay) validated MTIs and predicted MTIs.
bioinformatics database microrna-target-prediction mirna
Last synced: 18 Dec 2024
https://github.com/multitalk/miRTalk
Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data
cell-cell-communication cell-cell-interaction exosomes extracellular-vesicles microvesicles mirna scrna-seq-data single-cell-rna-seq
Last synced: 17 Apr 2025
https://github.com/lpantano/isomirs
analyze isomiRs from seqbuster tool
analyze-isomirs bioconductor isomirs mirna r
Last synced: 17 Mar 2025
https://github.com/mcanouil/nacho
NAnostring quality Control dasHbOard
mirna mrna nanostring normalisation quality-control r-package r-stats rstats shiny
Last synced: 23 Nov 2024
https://github.com/lpantano/seqclusterviz
visualization of seqcluster output, try at:
mirna smallrna smallrna-seq trna-derived-small-rna visualization
Last synced: 11 Apr 2025
https://github.com/selcenari/cernanetsim
Simulation of interactions miRNA:Competing Targets
cerna mirna network-biology network-simulator r tcga tidygraph tidyverse
Last synced: 13 Apr 2025
https://github.com/yanndubs/mirnaseq-analysis
Analyze single-cell miRNA sequencing data from HL-60 cells along a 7-day time-course of ATRA treatment.
atra-treatment bioinformatics mirna mirnaseq-analysis rna-seq
Last synced: 10 Apr 2025
https://github.com/hobywan/miranda
A software to predict miRNA secondary structure regarding conformation energy and matching size.
Last synced: 29 Mar 2025
https://github.com/rennelab/hkref
Hybkit-Ref: Up-to-date Genomic Sequence Reference Database for Hyb
bioinformatics clash dna genetics genomics hyb mirna qclash ribonomics rna unafold vienna viennad
Last synced: 20 Feb 2025
https://github.com/llrs/mirna-ha
Efforts to relate miRNA from blood to clinical variables from alcoholic hepatitis
Last synced: 08 Apr 2025
https://github.com/l0sg/mirna_project
miRNA Discovery Project : simple, easy-to-use, rule-based miRNA candidate discovery with multithread acceleration
microrna microrna-sequence mirna python rna-seq
Last synced: 15 Mar 2025
